Structural Classification of Proteins
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Superfamily: GFP-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: GFP-like [54510]
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. Superfamily: GFP-like [54511]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Fluorescent proteins [54512] (6)
    1. Green fluorescent protein, GFP [54513]
      1. Jellyfish (Aequorea victoria) [TaxId: 6100] [54514] (53)
        SQ P42212
        1. 1oxd picpic
          "gold" class of GFP; cyan fluorescent protein
          complexed with nyc; mutant
          1. chain a [93687] picpiclink
        2. 1oxe picpic
          "gold" class of GFP; cyan fluorescent protein
          complexed with nyc; mutant
          1. chain a [93688] picpiclink
        3. 1kyp picpic
          Zn biosensor, apo form
          complexed with crg, mo6; mutant
          1. chain a [73280] picpiclink
        4. 1q4e picpic
          complexed with cro; mutant
          1. chain a [95788] picpiclink
        5. 1kys picpic
          Zn biosensor, Zn-bound form
          complexed with crg, zn, zn3; mutant
          1. chain a [73288] picpiclink
        6. 1q4a picpic
          complexed with cro; mutant
          1. chain a [95784] picpiclink
        7. 1qyf picpic
          complexed with cro, egl, mo5; mutant
          1. chain a [96588] picpiclink
        8. 1kyr picpic
          Zn biosensor, Cu-bound form
          complexed with crg, cu, mg; mutant
          1. chain a [73287] picpiclink
        9. 1h6r picpic
          a redox sensitive variant
          complexed with cl, pia; mutant
          1. chain a [65683] picpiclink
          2. chain b [65684] picpiclink
          3. chain c [65685] picpiclink
        10. 1s6z picpic
          complexed with cl, cr0; mutant
          1. chain a [98613] picpiclink
        11. 1q4c picpic
          complexed with cro; mutant
          1. chain a [95786] picpiclink
        12. 1q4b picpic
          complexed with cro; mutant
          1. chain a [95785] picpiclink
        13. 1jbz picpic
          a dual-wavelength emission variant
          complexed with cro, edo, mg; mutant
          1. chain a [77103] picpiclink
        14. 1q73 picpic
          complexed with cro; mutant
          1. chain a [96018] picpiclink
        15. 1q4d picpic
          complexed with cro; mutant
          1. chain a [95787] picpiclink
        16. 1oxf picpic
          "gold" class of GFP; cyan fluorescent protein
          complexed with 4in, 5za
          1. chain a [93689] picpiclink
        17. 1qyo picpic
          mutant
          1. chain a [96601] picpiclink
        18. 1rmo picpic
          complexed with 32t, cro
          1. chain a [105016] picpiclink
        19. 1qyq picpic
          complexed with cr5; mutant
          1. chain a [96602] picpiclink
        20. 1qy3 picpic
          mutant
          1. chain a [96570] picpiclink
        21. 1hcj picpic
          Photoproduct of the wild-type GFP
          complexed with csy; mutant
          1. chain a [65792] picpiclink
          2. chain b [65793] picpiclink
          3. chain c [65794] picpiclink
          4. chain d [65795] picpiclink
        22. 1huy picpic
          citrine, an improved yellow-emission variant
          complexed with cro; mutant
          1. chain a [61280] picpiclink
        23. 1rmm picpic
          complexed with 32s, cro
          1. chain a [105015] picpiclink
        24. 1ema picpic
          complexed with cro; mutant
          1. chain a [38339] picpiclink
        25. 1qxt picpic
          mutant
          1. chain a [96562] picpiclink
        26. 2emd picpic
          complexed with csh; mutant
          1. chain a [38340] picpiclink
        27. 1emg picpic
          complexed with cro; mutant
          1. chain a [38346] picpiclink
        28. 1gfl picpic
          mutant
          1. chain a [38341] picpiclink
          2. chain b [38342] picpiclink
        29. 1jby picpic
          a dual-wavelength emission variant
          complexed with cro; mutant
          1. chain a [77102] picpiclink
        30. 1myw picpic
          yellow-emission variant
          complexed with cr2; mutant
          1. chain a [79678] picpiclink
        31. 1rrx picpic
          complexed with mfc, yof
          1. chain a [105085] picpiclink
        32. 1emb picpic
          complexed with cro; mutant
          1. chain a [38344] picpiclink
        33. 1emk picpic
          complexed with ccy; mutant
          1. chain a [38343] picpiclink
        34. 1bfp picpic
          blue-emission variant
          complexed with iic; mutant
          1. chain a [38345] picpiclink
        35. 1emc picpic
          complexed with csy; mutant
          1. chain a [38352] picpiclink
          2. chain b [38353] picpiclink
          3. chain c [38354] picpiclink
          4. chain d [38355] picpiclink
        36. 1emf picpic
          complexed with csh; mutant
          1. chain a [38349] picpiclink
        37. 1emm picpic
          complexed with csy; mutant
          1. chain a [38348] picpiclink
        38. 2emn picpic
          complexed with csh; mutant
          1. chain a [38351] picpiclink
        39. 1kp5 picpic
          cyclic variant with linked natural termini
          complexed with csy, so4; mutant
          1. chain a [72842] picpiclink
          2. chain b [72843] picpiclink
        40. 1eml picpic
          complexed with csy; mutant
          1. chain a [38350] picpiclink
        41. 1jc1 picpic
          complexed with cro; mutant
          1. chain a [90888] picpiclink
          2. chain b [90889] picpiclink
          3. chain c [90890] picpiclink
        42. 1eme picpic
          complexed with csy; mutant
          1. chain a [38357] picpiclink
        43. 1b9c picpic
          complexed with cro; mutant
          1. chain a [38358] picpiclink
          2. chain b [38359] picpiclink
          3. chain c [38360] picpiclink
          4. chain d [38361] picpiclink
        44. 1yfp picpic
          yellow-emission variant
          complexed with cro; mutant
          1. chain a [38362] picpiclink
          2. chain b [38363] picpiclink
        45. 1f0b picpic
          complexed with cro; mutant
          1. chain a [38347] picpiclink
        46. 1c4f picpic
          complexed with cro; mutant
          1. chain a [38365] picpiclink
        47. 1f09 picpic
          complexed with cro, iod; mutant
          1. chain a [38356] picpiclink
        48. 2yfp picpic
          yellow-emission variant
          complexed with cro; mutant
          1. chain a [38364] picpiclink
        49. 1jc0 picpic
          complexed with cro; mutant
          1. chain a [90885] picpiclink
          2. chain b [90886] picpiclink
          3. chain c [90887] picpiclink
        50. 1rm9 picpic
          complexed with 4f3, 4fw
          1. chain a [105012] picpiclink
        51. 1cv7 picpic
          complexed with crf; mutant
          1. chain a [90428] picpiclink
        52. 2emo picpic
          complexed with csh; mutant
          1. chain a [38366] picpiclink
        53. 1rmp picpic
          complexed with 23s, cro
          1. chain a [105017] picpiclink
      2. Renilla reniformis [TaxId: 6136] [160126] (4)
        SQ Q963I9 7-226
        1. 2rh7 picpic
          complexed with cro
          1. region a:7-226 [152030] picpiclink
        2. 2rh7 picpic
          automatically matched to 2RH7 A:7-226
          complexed with cro
          1. region b:7-226 [152031] picpiclink
        3. 2rh7 picpic
          automatically matched to 2RH7 A:7-226
          complexed with cro
          1. region c:7-226 [152032] picpiclink
        4. 2rh7 picpic
          automatically matched to 2RH7 A:7-226
          complexed with cro
          1. region d:7-226 [152033] picpiclink
    2. Red fluorescent protein (fp583 or dsred(clontech)) [54515]
      1. Coral (Discosoma sp.) [TaxId: 86600] [54516] (2)
        1. 1ggx picpic
          complexed with crq
          1. chain a [38367] picpiclink
          2. chain b [38368] picpiclink
          3. chain c [38369] picpiclink
          4. chain d [38370] picpiclink
        2. 1g7k picpic
          complexed with crq; mutant
          1. chain a [38371] picpiclink
          2. chain b [38372] picpiclink
          3. chain c [38373] picpiclink
          4. chain d [38374] picpiclink
    3. Red fluorescent protein fp61 [102854]
      1. Sea anemone (Entacmaea quadricolor) [TaxId: 6118] [102855] (1)
        1. 1uis picpic
          complexed with acy, ca, nrq
          1. chain a [99431] picpiclink
          2. chain b [99432] picpiclink
    4. Pocilloporin pigment Rtms5 [89866]
      1. Coral (Montipora efflorescens) [TaxId: 105610] [89867] (2)
        1. 1mou picpic
          complexed with crq, iod
          1. chain a [85037] picpiclink
        2. 1mov picpic
          complexed with crq, iod; mutant
          1. chain a [85038] picpiclink
    5. GFP-like non-fluorescent chromoprotein FP595 [117863]
      1. Anemonia sulcata [TaxId: 6108] [117864] (1)
        SQ Q9GZ28 # 95% sequence identity
        1. 1xqm picpic
          complexed with acy, ch6
          1. chain a [115851] picpiclink
  2. Domain G2 of nidogen-1 [64244] (1)
    1. Domain G2 of nidogen-1 [64245]
      1. Mouse (Mus musculus) [TaxId: 10090] [64246] (2)
        1. 1gl4 picpicxrefxref
          complexed with epe, zn
          1. region a:399-631 [65286] picpiclink
        2. 1h4u picpicxref
          mutant
          1. region a:399-631 [60622] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk