Structural Classification of Proteins
home mail help root up expand collapse

Fold: GFP-like

beta-sheet folds into a barrel (n=11, S=14) around the central helix

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: GFP-like [54510]
    beta-sheet folds into a barrel (n=11, S=14) around the central helix

Superfamilies:

  1. GFP-like [54511] (2)
    link to SUPERFAMILY database - Superfamily
    1. Fluorescent proteins [54512] (6)
      1. Green fluorescent protein, GFP [54513]
        1. Jellyfish (Aequorea victoria) [TaxId: 6100] [54514] (53) picpic
          SQ P42212
        2. Renilla reniformis [TaxId: 6136] [160126] (4) picpic
          SQ Q963I9 7-226
      2. Red fluorescent protein (fp583 or dsred(clontech)) [54515]
        1. Coral (Discosoma sp.) [TaxId: 86600] [54516] (2) picpic
      3. Red fluorescent protein fp61 [102854]
        1. Sea anemone (Entacmaea quadricolor) [TaxId: 6118] [102855] (1) picpic
      4. Pocilloporin pigment Rtms5 [89866]
        1. Coral (Montipora efflorescens) [TaxId: 105610] [89867] (2) picpic
      5. GFP-like non-fluorescent chromoprotein FP595 [117863]
        1. Anemonia sulcata [TaxId: 6108] [117864] (1) picpic
          SQ Q9GZ28 # 95% sequence identity
    2. Domain G2 of nidogen-1 [64244] (1)
      1. Domain G2 of nidogen-1 [64245]
        1. Mouse (Mus musculus) [TaxId: 10090] [64246] (2) picpic
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk