Structural Classification of Proteins
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Protein: ATP-dependent DNA ligase, N-terminal domain from Chlorella virus PBCV-1 [TaxId: 10506]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: ATP-grasp [56058]
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. Superfamily: DNA ligase/mRNA capping enzyme, catalytic domain [56091]
    has a circularly permuted topology
    link to SUPERFAMILY database - Superfamily
  5. Family: ATP-dependent DNA ligase catalytic domain [56092]
  6. Protein: ATP-dependent DNA ligase, N-terminal domain [56093]
  7. Species: Chlorella virus PBCV-1 [TaxId: 10506] [56095]

PDB Entry Domains:

  1. 1fvi picpicxref
    complexed with amp, so4; mutant
    1. region a:2-189 [41578] picpiclink
  2. 2q2t picpicxref
    automatically matched to d1p8la2
    complexed with amp, omc
    1. region a:2-189 [150015] picpiclink
  3. 2q2u picpicxrefxrefxrefxref
    automatically matched to d1p8la2
    complexed with omc
    1. region a:2-189 [150017] picpiclink
  4. 2q2u picpicxrefxrefxrefxref
    automatically matched to d1p8la2
    complexed with omc
    1. region b:2-189 [150019] picpiclink
  5. 2q2u picpicxrefxrefxrefxref
    automatically matched to d1p8la2
    complexed with omc
    1. region c:2-189 [150021] picpiclink
  6. 2q2u picpicxrefxrefxrefxref
    automatically matched to d1p8la2
    complexed with omc
    1. region d:2-189 [150023] picpiclink
  7. 1p8l picpicxref
    complexed with amp
    1. region a:2-189 [94364] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk