Structural Classification of Proteins
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Family: Porphyromonas-type peptidylarginine deiminase

Pfam 04371; functionally related to the amidinotransferase, similar active site

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Pentein, beta/alpha-propeller [55908]
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. Superfamily: Pentein [55909]
    link to SUPERFAMILY database - Superfamily
  5. Family: Porphyromonas-type peptidylarginine deiminase [111155]
    Pfam 04371; functionally related to the amidinotransferase, similar active site

Protein Domains:

  1. Agmatine iminohydrolase [111156]
    1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [111157] (3) picpic
      SQ Q8GWW7
    2. Streptococcus mutans [TaxId: 1309] [143807] (12) picpic
      SQ Q8DW17 2-370
    3. Enterococcus faecalis [TaxId: 1351] [160717] (6) picpic
      SQ Q837U5 2-365
  2. Putative peptidyl-arginine deiminase [111158]
    1. Helicobacter pylori J99 [TaxId: 85963] [111159] (1) picpic
      SQ Q9ZN18
    2. Chlorobium tepidum [TaxId: 1097] [118089] (1) picpic
      SQ Q8KCB6
    3. Porphyromonas gingivalis [TaxId: 837] [143808] (2) picpic
      SQ Q7MXM8 3-341
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk