Structural Classification of Proteins
home mail help root up expand collapse

Family: Porphyromonas-type peptidylarginine deiminase

Pfam 04371; functionally related to the amidinotransferase, similar active site

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Pentein, beta/alpha-propeller [55908]
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. Superfamily: Pentein [55909]
    link to SUPERFAMILY database - Superfamily
  5. Family: Porphyromonas-type peptidylarginine deiminase [111155]
    Pfam 04371; functionally related to the amidinotransferase, similar active site

Protein Domains:

  1. Agmatine iminohydrolase [111156]
    1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [111157] (3)
      SQ Q8GWW7
      1. 1vkp picpic
        Structural genomics target
        complexed with edo, mg, mpo
        1. chain a [108686] picpiclink
        2. chain b [108687] picpiclink
      2. 2q3u picpic
        automatically matched to d1vkpa_
        complexed with edo, mg, mpo
        1. region a:5-376 [139809] picpiclink
      3. 2q3u picpic
        automatically matched to d1vkpa_
        complexed with edo, mg, mpo
        1. region b:7-376 [139810] picpiclink
    2. Streptococcus mutans [TaxId: 1309] [143807] (12)
      SQ Q8DW17 2-370
      1. 2ewo picpic
        1. region a:2-370 [132476] picpiclink
      2. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region b:2-370 [132477] picpiclink
      3. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region c:2-370 [132478] picpiclink
      4. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region d:2-370 [132479] picpiclink
      5. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region e:2-370 [132480] picpiclink
      6. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region f:2-370 [132481] picpiclink
      7. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region g:2-370 [132482] picpiclink
      8. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region h:2-370 [132483] picpiclink
      9. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region i:2-370 [132484] picpiclink
      10. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region j:2-370 [132485] picpiclink
      11. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region k:2-370 [132486] picpiclink
      12. 2ewo picpic
        automatically matched to 2EWO A:2-370
        1. region l:2-370 [132487] picpiclink
    3. Enterococcus faecalis [TaxId: 1351] [160717] (6)
      SQ Q837U5 2-365
      1. 2jer picpic
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region a:2-365 [148019] picpiclink
      2. 2jer picpic
        automatically matched to 2JER A:2-365
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region b:2-365 [148020] picpiclink
      3. 2jer picpic
        automatically matched to 2JER A:2-365
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region c:2-365 [148021] picpiclink
      4. 2jer picpic
        automatically matched to 2JER A:2-365
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region d:2-365 [148022] picpiclink
      5. 2jer picpic
        automatically matched to 2JER A:2-365
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region e:2-365 [148023] picpiclink
      6. 2jer picpic
        automatically matched to 2JER A:2-365
        complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
        1. region f:2-365 [148024] picpiclink
  2. Putative peptidyl-arginine deiminase [111158]
    1. Helicobacter pylori J99 [TaxId: 85963] [111159] (1)
      SQ Q9ZN18
      1. 2cmu picpic
        1. region a:3-332 [146414] picpiclink
    2. Chlorobium tepidum [TaxId: 1097] [118089] (1)
      SQ Q8KCB6
      1. 1xkn picpic
        Structural genomics target
        complexed with cl, na
        1. chain a [115414] picpiclink
    3. Porphyromonas gingivalis [TaxId: 837] [143808] (2)
      SQ Q7MXM8 3-341
      1. 1zbr picpic
        1. region a:3-341 [124868] picpiclink
      2. 1zbr picpic
        automatically matched to 1ZBR A:3-341
        1. region b:3-341 [124869] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk