Family: Ribosomal protein L28

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: L28p-like [143799]
   unusual fold consisting of three beta-hairpins, that form a paper clip-like structure, and two helices; could have evolved from a glucocorticoid receptor-like zinc finger domain (scop_cf 57715)
4. Superfamily: L28p-like [143800]
   In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known
   uperfamily
5. Family: Ribosomal protein L28 [143801]

Protein Domains:

1. Ribosomal protein L28 (L28p) [143802]
   1. Thermus thermophilus [TaxId: 274] [143803] (2)
      SQ P60494 7-95
      1. 2j01
         1. region 1:8-96 [137859]
      2. 2j03
         automatically matched to 2J01 1:8-96
         complexed with lys
         1. region 1:8-96 [145584]
   2. Deinococcus radiodurans [TaxId: 1299] [160708] (5)
      SQ Q9RRG8 8-79
      1. 2zjr
         Representative structure
         complexed with mg
         1. region u:8-79 [154574]
      2. 2zjq
         automatically matched to 2ZJR U:8-79
         1. region u:8-79 [154545]
      3. 3cf5
         automatically matched to 2ZJR U:8-79
         complexed with mg, txx
         1. region u:8-79 [156561]
      4. 2zjp
         automatically matched to 2ZJR U:8-79
         complexed with mg, nsh, zn
         1. region u:8-79 [154513]
      5. 3dll
         automatically matched to 2ZJR U:8-79
         complexed with mg, zld, zn
         1. region u:8-79 [157798]
   3. Escherichia coli [TaxId: 562] [160709] (18)
      SQ P0A7M2 1-77
      1. 2qam
         automatically matched to 2I2T X:1-77
         complexed with mg, nmy, zn
         1. region z:2-78 [150266]
      2. 2qao
         automatically matched to 2I2T X:1-77
         complexed with mg, nmy, zn
         1. region z:2-78 [150319]
      3. 2i2t
         Representative structure
         complexed with mg, zn
         1. region x:1-77 [145460]
      4. 2i2v
         automatically matched to 2I2T X:1-77
         complexed with mg, zn
         1. region x:1-77 [145502]
      5. 2qbe
         automatically matched to 2I2T X:1-77
         complexed with mg, zn
         1. region z:2-78 [150486]
      6. 2qbg
         automatically matched to 2I2T X:1-77
         complexed with mg, zn
         1. region z:2-78 [150540]
      7. 2qoz
         automatically matched to 2I2T X:1-77
         complexed with mg, nmy, zn
         1. region z:2-78 [151142]
      8. 2qp1
         automatically matched to 2I2T X:1-77
         complexed with mg, nmy, zn
         1. region z:2-78 [151195]
      9. 3df2
         automatically matched to 2I2T X:1-77
         complexed with mg, zn
         1. region z:2-78 [157655]
      10. 3df4
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [157709]
      11. 2qba
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150379]
      12. 2qbc
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150432]
      13. 2qbi
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150594]
      14. 2qbk
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150648]
      15. 2qov
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [151036]
      16. 2qox
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [151089]
      17. 2z4l
          automatically matched to 2I2T X:1-77
          complexed with mg, par, zn
          1. region z:2-78 [154104]
      18. 2z4n
          automatically matched to 2I2T X:1-77
          complexed with mg, par, zn
          1. region z:2-78 [154158]
   4. Thermotoga maritima [TaxId: 2336] [160710] (1)
      SQ Q9WY96 1-70
      1. 2jz6
         solution structure with the ordered "GATA-like zinc finger" core
         1. region a:6-75 [148245]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk