Structural Classification of Proteins
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Superfamily: L28p-like

In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: L28p-like [143799]
    unusual fold consisting of three beta-hairpins, that form a paper clip-like structure, and two helices; could have evolved from a glucocorticoid receptor-like zinc finger domain (scop_cf 57715)
  4. Superfamily: L28p-like [143800]
    In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribosomal protein L28 [143801] (4)
    1. Ribosomal protein L28 (L28p) [143802]
      1. Thermus thermophilus [TaxId: 274] [143803] (2)
        SQ P60494 7-95
        1. 2j01 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          1. region 1:8-96 [137859] picpiclink
        2. 2j03 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 1:8-96
          complexed with lys
          1. region 1:8-96 [145584] picpiclink
      2. Deinococcus radiodurans [TaxId: 1299] [160708] (5)
        SQ Q9RRG8 8-79
        1. 2zjr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          Representative structure
          complexed with mg
          1. region u:8-79 [154574] picpiclink
        2. 2zjq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2ZJR U:8-79
          1. region u:8-79 [154545] picpiclink
        3. 3cf5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2ZJR U:8-79
          complexed with mg, txx
          1. region u:8-79 [156561] picpiclink
        4. 2zjp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2ZJR U:8-79
          complexed with mg, nsh, zn
          1. region u:8-79 [154513] picpiclink
        5. 3dll picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2ZJR U:8-79
          complexed with mg, zld, zn
          1. region u:8-79 [157798] picpiclink
      3. Escherichia coli [TaxId: 562] [160709] (18)
        SQ P0A7M2 1-77
        1. 2qam picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, nmy, zn
          1. region z:2-78 [150266] picpiclink
        2. 2qao picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, nmy, zn
          1. region z:2-78 [150319] picpiclink
        3. 2i2t picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          Representative structure
          complexed with mg, zn
          1. region x:1-77 [145460] picpiclink
        4. 2i2v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region x:1-77 [145502] picpiclink
        5. 2qbe picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [150486] picpiclink
        6. 2qbg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [150540] picpiclink
        7. 2qoz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, nmy, zn
          1. region z:2-78 [151142] picpiclink
        8. 2qp1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, nmy, zn
          1. region z:2-78 [151195] picpiclink
        9. 3df2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [157655] picpiclink
        10. 3df4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [157709] picpiclink
        11. 2qba picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150379] picpiclink
        12. 2qbc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150432] picpiclink
        13. 2qbi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150594] picpiclink
        14. 2qbk picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with lll, mg, zn
          1. region z:2-78 [150648] picpiclink
        15. 2qov picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [151036] picpiclink
        16. 2qox picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, zn
          1. region z:2-78 [151089] picpiclink
        17. 2z4l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, par, zn
          1. region z:2-78 [154104] picpiclink
        18. 2z4n picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2I2T X:1-77
          complexed with mg, par, zn
          1. region z:2-78 [154158] picpiclink
      4. Thermotoga maritima [TaxId: 2336] [160710] (1)
        SQ Q9WY96 1-70
        1. 2jz6 picpic
          solution structure with the ordered "GATA-like zinc finger" core
          1. region a:6-75 [148245] picpiclink
  2. Ribosomal protein L31p [143804] (2)
    Pfam 01197
    1. Ribosomal protein L31p [143805]
      1. Escherichia coli [TaxId: 562] [143806] (9)
        SQ P0A7M9 1-70
        1. 1vs6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW4 Z:1-70
          complexed with mg
          1. region z:1-70 [120502] picpiclink
        2. 1vs8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW4 Z:1-70
          complexed with mg
          1. region z:1-70 [120516] picpiclink
        3. 2aw4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg
          1. region z:1-70 [127407] picpiclink
        4. 2awb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW4 Z:1-70
          complexed with mg
          1. region z:1-70 [127429] picpiclink
        5. 2vhm picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1vs6z1
          complexed with mg; mutant
          1. region z:1-70 [153089] picpiclink
        6. 2vhn picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1vs6z1
          complexed with mg
          1. region z:1-70 [153121] picpiclink
        7. 2rdo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1vs6z1
          1. region z:1-70 [151966] picpiclink
        8. 2j28 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW4 Z:1-70
          complexed with mg
          1. region z:1-70 [137971] picpiclink
        9. 3bbx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1vs6z1
          complexed with mg
          1. region z:1-70 [155123] picpiclink
      2. Thermus thermophilus [TaxId: 274] [160711] (7)
        SQ Q5SJE1 1-50
        1. 2j01 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          putative assignment of L31 location in the ribosome structure; the protein shows no ordered structure
          1. region 4:1-50 [145559] picpiclink
        2. 2j03 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          complexed with lys
          1. region 4:1-50 [145586] picpiclink
        3. 2v47 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          1. region 4:1-50 [152505] picpiclink
        4. 2v49 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          1. region 4:1-50 [152541] picpiclink
        5. 2hgq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          1. region 3:1-50 [145331] picpiclink
        6. 2hgj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          1. region 3:1-50 [145299] picpiclink
        7. 2hgu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2J01 4:1-50
          1. region 3:1-50 [145363] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk