Structural Classification of Proteins

Superfamily: L30e-like

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Bacillus chorismate mutase-like [55297]
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
Superfamily: L30e-like [55315]
uperfamily

Families:

L30e/L7ae ribosomal proteins [55316] (11)
1. Eukaryotic ribosomal protein L30 (L30e) [55317]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55318] (4)
    SQ P14120
    1. 1t0k
      complexed with mtt
      1. chain b [106215]
    2. 1cn7
      1. chain a [39805]
    3. 1ck2
      1. chain a [39809]
    4. 1nmu
      fusion protein with MBP
      complexed with mtt
      1. chain b [80666]
      2. chain d [80668]
  2. Archaeon Thermococcus celer [TaxId: 2264] [89986] (8)
    1. 2bo1
      complexed with so4; mutant
      1. region a:1-100 [146161]
    2. 1w41
      mutant
      1. region a:1-99 [145812]
    3. 1w42
      mutant
      1. region a:1-99 [145813]
    4. 1w3e
      mutant
      1. region x:1-98 [145810]
    5. 1h7m
      1. chain a [83485]
    6. 1w40
      mutant
      1. region a:1-97 [145811]
    7. 1go0
      1. chain a [83293]
    8. 1go1
      1. chain a [83294]
2. Ribosomal protein L7ae [55319]
  1. Archaeon Pyrococcus abyssi [TaxId: 29292] [103081] (2)
    1. 2czw
      automatically matched to d1pxwa_
      1. region a:7-124 [131058]
    2. 1pxw
      1. chain a [95305]
      2. chain b [95306]
  2. Archaeon Haloarcula marismortui [TaxId: 2238] [55320] (58)
    SQ P12743
    1. 1vqo
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3
      1. region f:1-119 [120368]
    2. 3cc2
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
      1. region f:1-119 [156175]
    3. 1vq8
      automatically matched to d1s72f_
      complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
      1. region f:1-119 [120194]
    4. 1vqp
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, dcz, hfa, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
      1. region f:1-119 [120397]
    5. 1jj2
      complexed with cd, cl, k, mg, na
      1. chain f [63091]
    6. 1yhq
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3, zit; mutant
      1. region f:1-119 [123189]
    7. 1vql
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, tse, ur3
      1. region f:1-119 [120281]
    8. 1vqk
      automatically matched to d1s72f_
      complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
      1. region f:1-119 [120252]
    9. 1s72
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
      1. chain f [105325]
    10. 1vqm
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
      1. region f:1-119 [120310]
    11. 3ccm
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156337]
    12. 1vqn
      automatically matched to d1s72f_
      complexed with 1ma, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, ppu, psu, sr, ur3
      1. region f:1-119 [120339]
    13. 3cc7
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156225]
    14. 1yi2
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, ery, k, mg, na, omg, omu, psu, ur3; mutant
      1. region f:1-119 [123236]
    15. 1yij
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, tel, ur3; mutant
      1. region f:1-119 [123304]
    16. 3ccu
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156433]
    17. 1vq7
      automatically matched to d1s72f_
      complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, pae, psu, ur3
      1. region f:1-119 [120165]
    18. 3cce
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156265]
    19. 3ccl
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156313]
    20. 1vq4
      automatically matched to d1s72f_
      complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, po2, psu, ur3
      1. region f:1-119 [120078]
    21. 2otl
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, gir, k, mg, na, omg, omu, psu, ur3
      1. region f:1-119 [139352]
    22. 1vq5
      automatically matched to d1s72f_
      complexed with 1ma, 2op, 5aa, cd, cl, dcz, k, mg, na, omg, omu, po2, psu, ur3
      1. region f:1-119 [120107]
    23. 1vq9
      automatically matched to d1s72f_
      complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
      1. region f:1-119 [120223]
    24. 3ccv
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156457]
    25. 3cpw
      automatically matched to d1s72f_
      complexed with ace, cd, cl, k, mg, na, sr, zld; mutant
      1. region f:1-119 [156908]
    26. 1m90
      complexed with aca, cd, cl, k, mg, na, pha, sps
      1. chain h [78846]
    27. 1yit
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3, vir, vrs
      1. region f:1-119 [123347]
    28. 1vq6
      automatically matched to d1s72f_
      complexed with 1ma, 5aa, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, psu, ur3
      1. region f:1-119 [120136]
    29. 3cc4
      automatically matched to d1s72f_
      complexed with 1ma, anm, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
      1. region f:1-119 [156201]
    30. 3ccq
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156361]
    31. 3cd6
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3; mutant
      1. region f:1-119 [156481]
    32. 2otj
      automatically matched to d1s72f_
      complexed with 13t, 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
      1. region f:1-119 [139323]
    33. 3ccs
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156409]
    34. 3cma
      automatically matched to d1s72f_
      complexed with 1ma, 8an, aca, cd, cl, k, mg, na, omg, omu, phe, psu, sr, ur3
      1. region f:1-119 [156777]
    35. 1yjw
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, syb, ur3; mutant
      1. region f:1-119 [123471]
    36. 1nji
      complexed with cd, cl, clm, k, mg, na; mutant
      1. chain h [85799]
    37. 2qex
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, neg, omg, omu, psu, ur3
      1. region f:1-119 [150694]
    38. 3ccr
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156385]
    39. 1kqs
      complexed with aca, btn, cd, cl, k, mg, na, pha, ppu
      1. chain f [68821]
    40. 3ccj
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3; mutant
      1. region f:1-119 [156289]
    41. 1kc8
      complexed with bls, cd, cl, k, mg, na
      1. chain h [84363]
    42. 1yjn
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, cly, k, mg, na, omg, omu, psu, ur3; mutant
      1. region f:1-119 [123439]
    43. 1n8r
      complexed with cd, cl, k, mg, na, vir; mutant
      1. chain h [85435]
    44. 1k73
      complexed with anm, cd, cl, k, mg, na
      1. chain h [84324]
    45. 1yj9
      automatically matched to d1s72f_
      complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3; mutant
      1. region f:1-119 [123400]
    46. 1qvg
      complexed with cd, cl, k, mg, na
      1. chain f [96398]
    47. 1q82
      complexed with cd, cl, k, mg, na, ppu
      1. chain h [96135]
    48. 1qvf
      complexed with cd, cl, k, mg, na
      1. chain f [96368]
    49. 1q81
      complexed with cd, cl, k, mg, na, ppu
      1. chain h [96105]
    50. 1k9m
      complexed with cd, cl, k, mg, na, tyk
      1. chain h [72219]
    51. 1kd1
      complexed with cd, cl, k, mg, na, spr
      1. chain h [72330]
    52. 1k8a
      complexed with cai, cd, cl, k, mg, na
      1. chain h [72152]
    53. 1m1k
      complexed with cd, cl, k, mg, na, zit
      1. chain h [74390]
    54. 3cme
      automatically matched to d1s72f_
      complexed with 1ma, 8an, aca, cd, cl, k, mg, na, omg, omu, phe, psu, sr, ur3
      1. region f:1-119 [156813]
    55. 1q86
      complexed with cd, cl, k, mg, na, pha
      1. chain h [96173]
    56. 2qa4
      automatically matched to d1s72f_
      complexed with cd, cl, k, mg, na, omg, omu, psu, ur3
      1. region f:1-119 [150179]
    57. 1q7y
      complexed with cd, cl, k, mg, na, po4, puy
      1. chain h [96071]
    58. 1ffk
      complexed with cd, k, mo3; mutant
      1. chain e [39812]
  3. Archaeon Methanococcus jannaschii [TaxId: 2190] [111033] (3)
    SQ P54066
    1. 1xbi
      automatically matched to d1sdsa_
      complexed with epe
      1. region a:2-116 [121840]
    2. 1sds
      complexed with ca, k
      1. chain a [105439]
      2. chain b [105440]
      3. chain c [105441]
    3. 1ra4
      1. chain a [111758]
  4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [111034] (1)
    SQ O29494 # AF0764
    1. 1rlg
      complexed with 5bu
      1. chain a [104981]
      2. chain b [104982]
  5. Aeropyrum pernix [TaxId: 56636] [160501] (1)
    SQ Q9YAX7 4-127
    1. 2fc3
      1. region a:4-127 [147019]
  6. Pyrococcus furiosus [TaxId: 2261] [160502] (1)
    SQ Q8U160 3-123
    1. 2hvy
      complexed with atp, zn; mutant
      1. region d:4-124 [145413]
  7. Cryptosporidium parvum [TaxId: 5807] [160503] (1)
    SQ Q7YYQ3 17-131
    1. 2aif
      1. region a:16-130 [146055]
3. Spliceosomal 15.5kd protein [55321]
  1. Human (Homo sapiens) [TaxId: 9606] [55322] (4)
    1. 2ozb
      automatically matched to d1e7ka_
      complexed with ca
      1. region a:4-128 [139445]
    2. 2ozb
      automatically matched to d1e7ka_
      complexed with ca
      1. region d:4-128 [139446]
    3. 1e7k
      1. chain a [39813]
      2. chain b [39814]
    4. 2jnb
      automatically matched to d1e7ka_
      1. region a:4-128 [148148]
4. Small nuclear ribonucleoprotein-associated protein 1, Snu13p [160504]
  1. Saccharomyces cerevisiae [TaxId: 4932] [160505] (3)
    SQ P39990 1-126! SQ P39990 2-126
    1. 2ale
      complexed with mg
      1. region a:1-126 [146061]
    2. 1zwz
      1. region a:4-128 [146031]
    3. 1zwz
      automatically matched to 1ZWZ A:4-128
      1. region b:4-128 [146032]
RNA 2'-O ribose methyltransferase substrate binding domain [75480] (2)
1. RrmA (RrmH), N-terminal domain [75481]
  23S rRNA methyltransferase; proposed gene names are as appear in the original publication (and the PDB entry)
  1. Thermus thermophilus [TaxId: 274] [75482] (1)
    1. 1ipa
      1. region a:1-105 [71255]
2. RlmB, N-terminal domain [82721]
  23S rRNA G2251 2'O-methytransferase
  1. Escherichia coli [TaxId: 562] [82722] (1)
    1. 1gz0
      complexed with mse
      1. region a:2-77 [76392]
      2. region b:-1-77 [76394]
      3. region c:2-77 [76396]
      4. region d:-1-77 [76398]
      5. region f:-10-77 [76401]
      6. region h:-7-77 [76404]
ERF1/Dom34 C-terminal domain-like [55323] (4)
1. C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [55324]
  contains a large insertion forming a separate (sub)domain
  1. Human (Homo sapiens) [TaxId: 9606] [55325] (1)
    1. 1dt9
      1. region a:277-422 [39815]
2. Cell division protein pelota [160506]
  1. Human (Homo sapiens) [TaxId: 9606] [160507] (1)
    SQ Q9BRX2 261-371
    1. 1x52
      1. region a:8-118 [145854]
  2. Thermoplasma acidophilum [TaxId: 2303] [160508] (1)
    SQ Q9HJ74 244-338
    1. 2qi2
      1. region a:244-338 [150802]
3. Dom34 [160509]
  1. Saccharomyces cerevisiae [TaxId: 4932] [160510] (3)
    SQ P33309 278-381
    1. 2vgn
      automatically matched to 2VGM A:278-381
      complexed with gol, po4
      1. region a:278-381 [153042]
    2. 2vgn
      automatically matched to 2VGM A:278-381
      complexed with gol, po4
      1. region b:278-381 [153045]
    3. 2vgm
      1. region a:278-381 [153039]