Structural Classification of Proteins
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Family: IpsF-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Bacillus chorismate mutase-like [55297]
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. Superfamily: IpsF-like [69765]
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
    link to SUPERFAMILY database - Superfamily
  5. Family: IpsF-like [69766]

Protein Domains:

  1. 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69767]
    1. Escherichia coli [TaxId: 562] [69768] (11)
      SQ P62617 ! SQ P36663
      1. 1gx1 picpic
        complexed with cdf, mn, mse, so4, zn
        1. chain a [70675] picpiclink
        2. chain b [70676] picpiclink
        3. chain c [70677] picpiclink
      2. 1h47 picpic
        complexed with c5p, gpp, zn
        1. chain a [111615] picpiclink
        2. chain b [111616] picpiclink
        3. chain c [111617] picpiclink
        4. chain d [111618] picpiclink
        5. chain e [111619] picpiclink
        6. chain f [111620] picpiclink
      3. 1h48 picpic
        complexed with c5p, cdi, gpp, mn, zn
        1. chain a [111621] picpiclink
        2. chain b [111622] picpiclink
        3. chain c [111623] picpiclink
        4. chain d [111624] picpiclink
        5. chain e [111625] picpiclink
        6. chain f [111626] picpiclink
      4. 1jy8 picpic
        complexed with c, cdi, zn
        1. chain a [67452] picpiclink
      5. 2gzl picpic
        automatically matched to d1h48c_
        complexed with 2aa, gpp, zn
        1. region a:-1-157 [135909] picpiclink
      6. 1u3l picpic
        complexed with cdp, mg, zn
        1. chain a [107643] picpiclink
      7. 1u3p picpic
        complexed with zn3
        1. chain a [107644] picpiclink
      8. 1u40 picpic
        complexed with cdm, zn
        1. chain a [107647] picpiclink
      9. 1knk picpic
        complexed with mn
        1. chain a [72779] picpiclink
      10. 1knj picpic
        complexed with c5p, cdi, mn, mse
        1. chain a [72778] picpiclink
      11. 1u43 picpic
        complexed with sud
        1. chain a [107653] picpiclink
    2. Haemophilus influenzae [TaxId: 727] [75479] (3)
      1. 1vh8 picpic
        structural genomics
        complexed with acy, pop
        1. chain a [100647] picpiclink
        2. chain b [100648] picpiclink
        3. chain c [100649] picpiclink
        4. chain d [100650] picpiclink
        5. chain e [100651] picpiclink
        6. chain f [100652] picpiclink
      2. 1vha picpic
        structural genomics
        complexed with acy, mn, pop
        1. chain a [100655] picpiclink
        2. chain b [100656] picpiclink
        3. chain c [100657] picpiclink
        4. chain d [100658] picpiclink
        5. chain e [100659] picpiclink
        6. chain f [100660] picpiclink
      3. 1jn1 picpic
        structural genomics
        complexed with co, so4
        1. chain a [71754] picpiclink
        2. chain b [71755] picpiclink
        3. chain c [71756] picpiclink
    3. Thermus thermophilus [TaxId: 274] [82720] (4)
      1. 1iv3 picpic
        complexed with mg; mutant
        1. chain a [76828] picpiclink
        2. chain c [76830] picpiclink
        3. chain d [76831] picpiclink
        4. chain b [76829] picpiclink
        5. chain e [76832] picpiclink
        6. chain f [76833] picpiclink
      2. 1iv4 picpic
        complexed with c5p, mg; mutant
        1. chain a [76834] picpiclink
        2. chain c [76836] picpiclink
        3. chain d [76837] picpiclink
        4. chain b [76835] picpiclink
        5. chain e [76838] picpiclink
        6. chain f [76839] picpiclink
      3. 1iv2 picpic
        complexed with cdp, mg; mutant
        1. chain a [76822] picpiclink
        2. chain c [76824] picpiclink
        3. chain d [76825] picpiclink
        4. chain b [76823] picpiclink
        5. chain e [76826] picpiclink
        6. chain f [76827] picpiclink
      4. 1iv1 picpic
        1. chain a [76816] picpiclink
        2. chain c [76818] picpiclink
        3. chain d [76819] picpiclink
        4. chain b [76817] picpiclink
        5. chain e [76820] picpiclink
        6. chain f [76821] picpiclink
    4. Shewanella oneidensis [TaxId: 70863] [118026] (1)
      SQ Q8EBR3
      1. 1t0a picpic
        complexed with co, fpp, zn
        1. chain a [112192] picpiclink
        2. chain b [112193] picpiclink
        3. chain c [112194] picpiclink
  2. IspD/ispF bifunctional enzyme, MECDP synthase domain [118027]
    1. Campylobacter jejuni [TaxId: 197] [118028] (2)
      SQ Q9PM68
      1. 1w55 picpicxref
        complexed with c, edo, gpp, mg
        1. region a:208-370 [114198] picpiclink
      2. 1w57 picpicxref
        complexed with c, gpp, zn
        1. region a:208-370 [114200] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk