Structural Classification of Proteins
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Family: Ribosomal protein S4

has a RRF/tRNA synthetase additional domain-like fold

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Alpha-L RNA-binding motif [55173]
    alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta
  4. Superfamily: Alpha-L RNA-binding motif [55174]
    common motif in otherwise different folds
    link to SUPERFAMILY database - Superfamily
  5. Family: Ribosomal protein S4 [55178]
    has a RRF/tRNA synthetase additional domain-like fold

Protein Domains:

  1. Ribosomal protein S4 [55179]
    also contains a Zn-binding N-terminal subdomain
    1. Thermus thermophilus [TaxId: 274] [55180] (45)
      1. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 6mz, cm0, k, mg, par, zn
        1. region d:2-209 [139935] picpiclink
      2. 2vqe picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with k, mg, par, tm2, zn
        1. region d:2-209 [153428] picpiclink
      3. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, scm, sry, zn
        1. chain d [39553] picpiclink
      4. 2vqf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with k, mg, par, tm2, zn
        1. region d:2-209 [153447] picpiclink
      5. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with unx, zn
        1. chain d [71546] picpiclink
      6. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with k, mg, par, zn
        1. region d:2-209 [140006] picpiclink
      7. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 6mz, cm0, k, mg, par, zn
        1. region d:2-209 [139955] picpiclink
      8. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 6mz, cm0, k, mg, par, zn
        1. region d:2-209 [139915] picpiclink
      9. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, t6a, zn
        1. chain d [115532] picpiclink
      10. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, psu, zn
        1. chain d [79872] picpiclink
      11. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 6mz, cm0, k, mg, par, zn
        1. region d:2-209 [139895] picpiclink
      12. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, zn
        1. chain d [115606] picpiclink
      13. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, zn
        1. chain d [115628] picpiclink
      14. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain d [39554] picpiclink
      15. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with hyg, mg, zn
        1. chain d [39555] picpiclink
      16. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 5mu, mg, par, zn
        1. region d:2-209 [137868] picpiclink
      17. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 5mu, mg, par, zn
        1. region d:2-209 [137841] picpiclink
      18. 2uxd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with k, mg, par, zn
        1. region d:2-209 [152284] picpiclink
      19. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, mnu, par, t6a, zn
        1. chain d [115502] picpiclink
      20. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, tac, zn
        1. chain d [39556] picpiclink
      21. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with zn
        1. region d:2-209 [132027] picpiclink
      22. 3d5a picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with mg, zn
        1. region d:2-209 [157338] picpiclink
      23. 3d5c picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with mg, zn
        1. region d:2-209 [157368] picpiclink
      24. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, wo2, zn
        1. chain d [61994] picpiclink
      25. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pcy, zn
        1. chain d [39557] picpiclink
      26. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, psu, zn
        1. chain d [79894] picpiclink
      27. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with ksg
        1. region d:2-209 [136479] picpiclink
      28. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, wo2, zn
        1. chain d [62038] picpiclink
      29. 2uxb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with k, mg, par, zn
        1. region d:2-209 [152265] picpiclink
      30. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with zn
        1. chain d [79916] picpiclink
      31. 2v46 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 5mu, mg, zn
        1. region d:2-209 [152486] picpiclink
      32. 2v48 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 5mu, mg, zn
        1. region d:2-209 [152522] picpiclink
      33. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, tac, wo2, zn
        1. chain d [62061] picpiclink
      34. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with zn
        1. chain d [79939] picpiclink
      35. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ede, mg, wo2, zn
        1. chain d [62016] picpiclink
      36. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgd_
        complexed with ab9, d2c, k, mg, zn
        1. region d:2-209 [132940] picpiclink
      37. 2qnh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
        1. region e:2-209 [150928] picpiclink
      38. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        1. region g:2-209 [136423] picpiclink
      39. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        1. region g:2-209 [136402] picpiclink
      40. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        1. region g:2-209 [136444] picpiclink
      41. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
        1. region e:2-209 [139401] picpiclink
      42. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        1. region g:2-209 [123599] picpiclink
      43. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with psu, yyg
        1. region d:2-209 [127935] picpiclink
      44. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with psu, yyg
        1. region d:2-209 [128165] picpiclink
      45. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1hnwd_
        complexed with psu, yyg
        1. region d:2-209 [128128] picpiclink
    2. Bacillus stearothermophilus [TaxId: 1422] [55181] (2)
      1. 1c06 picpic
        1. chain a [39558] picpiclink
      2. 1c05 picpic
        1. chain a [39559] picpiclink
    3. Escherichia coli [TaxId: 562] [160439] (26)
      SQ P0A7V8 1-205
      1. 2gy9 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        1. region d:2-205 [145233] picpiclink
      2. 2gyb picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        1. region d:2-205 [145255] picpiclink
      3. 2qal picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, nmy
        1. region d:1-205 [150216] picpiclink
      4. 2qan picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, nmy
        1. region d:1-205 [150270] picpiclink
      5. 2qbf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [150490] picpiclink
      6. 2qbd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [150436] picpiclink
      7. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with ksg, mg
        1. region d:1-205 [144438] picpiclink
      8. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with hyg, mg
        1. region d:1-205 [157605] picpiclink
      9. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with hyg, mg
        1. region d:1-205 [157659] picpiclink
      10. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with ksg, mg
        1. region d:1-205 [144479] picpiclink
      11. 2qoy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, nmy, scm
        1. region d:1-205 [151093] picpiclink
      12. 2qp0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, nmy, scm
        1. region d:1-205 [151146] picpiclink
      13. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        Representative structure
        complexed with mg
        1. region d:1-205 [144845] picpiclink
      14. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [144888] picpiclink
      15. 2qb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with lll, mg
        1. region d:1-205 [150330] picpiclink
      16. 2qbb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with lll, mg
        1. region d:1-205 [150383] picpiclink
      17. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [145423] picpiclink
      18. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [145465] picpiclink
      19. 2qbh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with lll, mg
        1. region d:1-205 [150544] picpiclink
      20. 2qbj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with lll, mg
        1. region d:1-205 [150598] picpiclink
      21. 2qou picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, scm
        1. region d:1-205 [150987] picpiclink
      22. 2qow picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, scm
        1. region d:1-205 [151040] picpiclink
      23. 2z4m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, par
        1. region d:1-205 [154108] picpiclink
      24. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [153125] picpiclink
      25. 2z4k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg, par
        1. region d:1-205 [154054] picpiclink
      26. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY D:1-205
        complexed with mg
        1. region d:1-205 [153147] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk