Structural Classification of Proteins
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Superfamily: Alpha-L RNA-binding motif

common motif in otherwise different folds
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Alpha-L RNA-binding motif [55173]
    alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta
  4. Superfamily: Alpha-L RNA-binding motif [55174]
    common motif in otherwise different folds
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribosomal protein S4 [55178] (3)
    has a RRF/tRNA synthetase additional domain-like fold
    1. Ribosomal protein S4 [55179]
      also contains a Zn-binding N-terminal subdomain
      1. Thermus thermophilus [TaxId: 274] [55180] (45)
        1. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 6mz, cm0, k, mg, par, zn
          1. region d:2-209 [139935] picpiclink
        2. 2vqe picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with k, mg, par, tm2, zn
          1. region d:2-209 [153428] picpiclink
        3. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, scm, sry, zn
          1. chain d [39553] picpiclink
        4. 2vqf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with k, mg, par, tm2, zn
          1. region d:2-209 [153447] picpiclink
        5. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with unx, zn
          1. chain d [71546] picpiclink
        6. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with k, mg, par, zn
          1. region d:2-209 [140006] picpiclink
        7. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 6mz, cm0, k, mg, par, zn
          1. region d:2-209 [139955] picpiclink
        8. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 6mz, cm0, k, mg, par, zn
          1. region d:2-209 [139915] picpiclink
        9. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, t6a, zn
          1. chain d [115532] picpiclink
        10. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, psu, zn
          1. chain d [79872] picpiclink
        11. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 6mz, cm0, k, mg, par, zn
          1. region d:2-209 [139895] picpiclink
        12. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, zn
          1. chain d [115606] picpiclink
        13. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, zn
          1. chain d [115628] picpiclink
        14. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. chain d [39554] picpiclink
        15. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with hyg, mg, zn
          1. chain d [39555] picpiclink
        16. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 5mu, mg, par, zn
          1. region d:2-209 [137868] picpiclink
        17. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 5mu, mg, par, zn
          1. region d:2-209 [137841] picpiclink
        18. 2uxd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with k, mg, par, zn
          1. region d:2-209 [152284] picpiclink
        19. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, mnu, par, t6a, zn
          1. chain d [115502] picpiclink
        20. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, tac, zn
          1. chain d [39556] picpiclink
        21. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with zn
          1. region d:2-209 [132027] picpiclink
        22. 3d5a picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with mg, zn
          1. region d:2-209 [157338] picpiclink
        23. 3d5c picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with mg, zn
          1. region d:2-209 [157368] picpiclink
        24. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, wo2, zn
          1. chain d [61994] picpiclink
        25. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, pcy, zn
          1. chain d [39557] picpiclink
        26. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, psu, zn
          1. chain d [79894] picpiclink
        27. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with ksg
          1. region d:2-209 [136479] picpiclink
        28. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, wo2, zn
          1. chain d [62038] picpiclink
        29. 2uxb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with k, mg, par, zn
          1. region d:2-209 [152265] picpiclink
        30. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. chain d [79916] picpiclink
        31. 2v46 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 5mu, mg, zn
          1. region d:2-209 [152486] picpiclink
        32. 2v48 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 5mu, mg, zn
          1. region d:2-209 [152522] picpiclink
        33. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, tac, wo2, zn
          1. chain d [62061] picpiclink
        34. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. chain d [79939] picpiclink
        35. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ede, mg, wo2, zn
          1. chain d [62016] picpiclink
        36. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1fjgd_
          complexed with ab9, d2c, k, mg, zn
          1. region d:2-209 [132940] picpiclink
        37. 2qnh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
          1. region e:2-209 [150928] picpiclink
        38. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          1. region g:2-209 [136423] picpiclink
        39. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          1. region g:2-209 [136402] picpiclink
        40. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          1. region g:2-209 [136444] picpiclink
        41. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
          1. region e:2-209 [139401] picpiclink
        42. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          1. region g:2-209 [123599] picpiclink
        43. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with psu, yyg
          1. region d:2-209 [127935] picpiclink
        44. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with psu, yyg
          1. region d:2-209 [128165] picpiclink
        45. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1hnwd_
          complexed with psu, yyg
          1. region d:2-209 [128128] picpiclink
      2. Bacillus stearothermophilus [TaxId: 1422] [55181] (2)
        1. 1c06 picpic
          1. chain a [39558] picpiclink
        2. 1c05 picpic
          1. chain a [39559] picpiclink
      3. Escherichia coli [TaxId: 562] [160439] (26)
        SQ P0A7V8 1-205
        1. 2gy9 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          1. region d:2-205 [145233] picpiclink
        2. 2gyb picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          1. region d:2-205 [145255] picpiclink
        3. 2qal picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, nmy
          1. region d:1-205 [150216] picpiclink
        4. 2qan picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, nmy
          1. region d:1-205 [150270] picpiclink
        5. 2qbf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [150490] picpiclink
        6. 2qbd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [150436] picpiclink
        7. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with ksg, mg
          1. region d:1-205 [144438] picpiclink
        8. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with hyg, mg
          1. region d:1-205 [157605] picpiclink
        9. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with hyg, mg
          1. region d:1-205 [157659] picpiclink
        10. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with ksg, mg
          1. region d:1-205 [144479] picpiclink
        11. 2qoy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, nmy, scm
          1. region d:1-205 [151093] picpiclink
        12. 2qp0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, nmy, scm
          1. region d:1-205 [151146] picpiclink
        13. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          Representative structure
          complexed with mg
          1. region d:1-205 [144845] picpiclink
        14. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [144888] picpiclink
        15. 2qb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with lll, mg
          1. region d:1-205 [150330] picpiclink
        16. 2qbb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with lll, mg
          1. region d:1-205 [150383] picpiclink
        17. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [145423] picpiclink
        18. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [145465] picpiclink
        19. 2qbh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with lll, mg
          1. region d:1-205 [150544] picpiclink
        20. 2qbj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with lll, mg
          1. region d:1-205 [150598] picpiclink
        21. 2qou picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, scm
          1. region d:1-205 [150987] picpiclink
        22. 2qow picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, scm
          1. region d:1-205 [151040] picpiclink
        23. 2z4m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, par
          1. region d:1-205 [154108] picpiclink
        24. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [153125] picpiclink
        25. 2z4k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg, par
          1. region d:1-205 [154054] picpiclink
        26. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY D:1-205
          complexed with mg
          1. region d:1-205 [153147] picpiclink
  2. Heat shock protein 15 kD [55182] (1)
    there are additional C-terminal structures
    1. Heat shock protein 15 kD [55183]
      ribosome-binding protein
      1. Escherichia coli [TaxId: 562] [55184] (2)
        1. 1dm9 picpic
          1. chain a [39560] picpiclink
          2. chain b [39561] picpiclink
        2. 3bbu picpic
          automatically matched to d1dm9b_
          1. region a:5-108 [155093] picpiclink
  3. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75465] (2)
    there are additional N-terminal structures
    1. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75466]
      1. Thermus thermophilus [TaxId: 274] [82701] (2)
        1. 1h3f picpicxref
          complexed with so4, tyb
          1. region a:352-432 [76632] picpiclink
          2. region b:353-432 [76634] picpiclink
        2. 1h3e picpicxref
          complexed with atp, mad, psu, rt, tyb
          1. region a:352-432 [76630] picpiclink
      2. Bacillus stearothermophilus [TaxId: 1422] [75467] (1)
        1. 1jh3 picpic
          1. chain a [71661] picpiclink
  4. YbcJ-like [103046] (1)
    overall topological similarity to the TyrRS C-domain
    1. Hypothetical protein YbcJ [103047]
      1. Escherichia coli [TaxId: 562] [103048] (1)
        1. 1p9k picpic
          1. chain a [94392] picpiclink
  5. Pseudouridine synthase RsuA N-terminal domain [75468] (2)
    1. Pseudouridine synthase RsuA N-terminal domain [75469]
      1. Escherichia coli [TaxId: 562] [75470] (3)
        1. 1ksk picpicxref
          complexed with mse, ura
          1. region a:1-59 [72920] picpiclink
        2. 1ksl picpicxref
          complexed with mse, ura
          1. region a:1-59 [72923] picpiclink
        3. 1ksv picpicxref
          complexed with mse, u
          1. region a:1-59 [72939] picpiclink
      2. Haemophilus influenzae [TaxId: 727] [103049] (1)
        1. 1vio picpicxref
          structural genomics
          complexed with bu1
          1. region a:0-57 [100763] picpiclink
          2. region b:0-57 [100765] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk