Structural Classification of Proteins
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Family: Double-stranded RNA-binding domain (dsRBD)

Pfam 00035

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: dsRBD-like [54767]
    alpha-beta(3)-alpha; 2 layers: alpha/beta
  4. Superfamily: dsRNA-binding domain-like [54768]
    link to SUPERFAMILY database - Superfamily
  5. Family: Double-stranded RNA-binding domain (dsRBD) [54769]
    Pfam 00035

Protein Domains:

  1. Double-stranded RNA-binding protein A, second dsRBD [54770]
    1. Xenopus laevis [TaxId: 8355] [54771] (1) picpic
  2. Staufen, domain III [54772]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [54773] (2) picpic
  3. dsRNA-dependent protein kinase pkr [54774]
    contains tandem repeat of two dsRBD
    1. Human (Homo sapiens) [TaxId: 9606] [54775] (1) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [143201] (2) picpic
      SQ Q03963 1-85! SQ Q03963 96-181
  4. RNase III, C-terminal domain [54776]
    1. Thermotoga maritima [TaxId: 2336] [82644] (1) picpic
    2. Aquifex aeolicus [TaxId: 63363] [102927] (19) picpic
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [110913] (3) picpic
      SQ Q02555 364-447 ! SQ Q02555 366-453 ! SQ Q02555 363-443
  5. staufen homolog 2 [110914]
    1. Mouse (Mus musculus) [TaxId: 10090] [110915] (1) picpic
      SQ Q9D5N7 3-78
  6. ATP-dependent RNA helicase A, Dhx9 [117901]
    formerly hypothetical protein bab28848
    1. Mouse (Mus musculus) [TaxId: 10090] [117902] (2) picpic
      SQ O70133 4-89, 168-262
  7. tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) [117903]
    1. Mouse (Mus musculus) [TaxId: 10090] [117904] (1) picpic
      SQ Q9D7B1 350-464
  8. dsRNA-specific editase 1 [143202]
    duplication: contains two dsRBD domains
    1. Rat (Rattus norvegicus) [TaxId: 10116] [143203] (2) picpic
      SQ P51400 231-301! SQ P51400 74-146
  9. Interferon-inducible double stranded RNA-dependent protein kinase activator A [143204]
    1. Human (Homo sapiens) [TaxId: 9606] [143205] (1) picpic
      SQ O75569 32-104
  10. Dgcr8 protein [143206]
    1. Human (Homo sapiens) [TaxId: 9606] [143207] (1) picpic
      SQ Q8WYQ5 502-586
  11. TAR RNA-binding protein 2 [143208]
    duplication: contains three dsRBD
    1. Human (Homo sapiens) [TaxId: 9606] [143209] (1) picpic
      SQ Q15633 150-225
  12. Spermatid perinuclear RNA-binding protein [143210]
    1. Human (Homo sapiens) [TaxId: 9606] [143211] (1) picpic
      SQ Q96SI9 378-461
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk