Structural Classification of Proteins
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Family: Bacterial dinuclear zinc exopeptidases

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Phosphorylase/hydrolase-like [53162]
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. Superfamily: Zn-dependent exopeptidases [53187]
    core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
    link to SUPERFAMILY database - Superfamily
  5. Family: Bacterial dinuclear zinc exopeptidases [53204]

Protein Domains:

  1. Aminopeptidase [53205]
    1. Aeromonas proteolytica [TaxId: 671] [53206] (13) picpic
      SQ Q01693
      synonym: Vibrio proteolyticus
    2. Streptomyces griseus [TaxId: 1911] [53207] (11) picpic
  2. Aminopeptidase PepV [82450]
    unspecific amino dipeptidase
    1. Lactobacillus delbrueckii [TaxId: 1584] [82451] (1) picpic
  3. Carboxypeptidase G2, catalytic domain [53208]
    1. Pseudomonas sp., strain rs-16 [TaxId: 306] [53209] (1) picpic
  4. Peptidase T (tripeptidase), catalytic domain [75250]
    1. Salmonella typhimurium [TaxId: 90371] [75251] (1) picpic
    2. Escherichia coli [TaxId: 562] [102506] (1) picpic
  5. Peptidase-like beta-alanine synthase, catalytic domain [102507]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [102508] (2) picpic
  6. Succinyl-diaminopimelate desuccinylase, catalytic domain [102509]
    1. Neisseria meningitidis [TaxId: 487] [102510] (1) picpic
  7. Aminoacylase-1, catalytic domain [102511]
    1. Human (Homo sapiens) [TaxId: 9606] [102512] (1) picpic
  8. Hypothetical protein YsdC, catalytic domain [102513]
    contains insert beta-barrel domain
    1. Bacillus subtilis [TaxId: 1423] [102514] (1) picpic
  9. Putative endoglucanase TM1048, catalytic domain [102515]
    contains insert beta-barrel domain
    1. Thermotoga maritima [TaxId: 2336] [102516] (1) picpic
  10. Frv operon protein FrvX, catalytic domain [117659]
    1. Pyrococcus horikoshii [TaxId: 53953] [117660] (3) picpic
      SQ O59196 # PH1527
  11. Probable aminopeptidase ApeA [117661]
    contains insert beta-barrel domain
    1. Borrelia burgdorferi [TaxId: 139] [117662] (1) picpic
      SQ Q45055
  12. IAA-amino acid hydrolase, catalytic domain [117663]
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117664] (2) picpic
      SQ P54970 37-428
  13. Deblocking aminopeptidase YhfE [142512]
    contains insert beta-barrel domain
    1. Bacillus cereus [TaxId: 1396] [142513] (16) picpic
      SQ Q81HB5 3-73,187-348
      BC0901
  14. Allantoate amidohydrolase AllC catalytic domain [142514]
    1. Escherichia coli [TaxId: 562] [142515] (4) picpic
      SQ P77425 2-210,328-411
  15. Endoglucanase TM1049 [142516]
    1. Thermotoga maritima [TaxId: 2336] [142517] (1) picpic
      SQ Q9X0D9 1-64,149-339
  16. Protein YxeP [142518]
    1. Bacillus subtilis [TaxId: 1423] [142519] (2) picpic
      SQ P54955 4-177,293-379
  17. Aminopeptidase YpdE [142520]
    1. Shigella flexneri [TaxId: 623] [142521] (6) picpic
      SQ Q83K87 1-66,148-345
      hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk