Structural Classification of Proteins
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Protein: Aminopeptidase YpdE from Shigella flexneri [TaxId: 623]

SQ Q83K87 1-66,148-345
hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Phosphorylase/hydrolase-like [53162]
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. Superfamily: Zn-dependent exopeptidases [53187]
    core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
    link to SUPERFAMILY database - Superfamily
  5. Family: Bacterial dinuclear zinc exopeptidases [53204]
  6. Protein: Aminopeptidase YpdE [142520]
  7. Species: Shigella flexneri [TaxId: 623] [142521]
    SQ Q83K87 1-66,148-345
    hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)

PDB Entry Domains:

  1. 1ylo picpicxrefxrefxrefxrefxrefxref
    complexed with zn
    1. region a:1-66,a:148-345 [123660] picpiclink
  2. 1ylo picpicxrefxrefxrefxrefxrefxref
    automatically matched to 1YLO A:1-66,A:148-345
    complexed with zn
    1. region b:1-66,b:148-345 [123662] picpiclink
  3. 1ylo picpicxrefxrefxrefxrefxrefxref
    automatically matched to 1YLO A:1-66,A:148-345
    complexed with zn
    1. region c:1-66,c:148-345 [123664] picpiclink
  4. 1ylo picpicxrefxrefxrefxrefxrefxref
    automatically matched to 1YLO A:1-66,A:148-345
    complexed with zn
    1. region d:1-66,d:148-345 [123666] picpiclink
  5. 1ylo picpicxrefxrefxrefxrefxrefxref
    automatically matched to 1YLO A:1-66,A:148-345
    complexed with zn
    1. region e:1-66,e:148-345 [123668] picpiclink
  6. 1ylo picpicxrefxrefxrefxrefxrefxref
    automatically matched to 1YLO A:1-66,A:148-345
    complexed with zn
    1. region f:1-66,f:148-345 [123670] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk