Structural Classification of Proteins
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Family: Bacterial dinuclear zinc exopeptidases

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Phosphorylase/hydrolase-like [53162]
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. Superfamily: Zn-dependent exopeptidases [53187]
    core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
    link to SUPERFAMILY database - Superfamily
  5. Family: Bacterial dinuclear zinc exopeptidases [53204]

Protein Domains:

  1. Aminopeptidase [53205]
    1. Aeromonas proteolytica [TaxId: 671] [53206] (13)
      SQ Q01693
      synonym: Vibrio proteolyticus
      1. 1rtq picpic
        complexed with na, scn, zn
        1. chain a [97819] picpiclink
      2. 1lok picpic
        complexed with na, scn, trs, zn
        1. chain a [78122] picpiclink
      3. 2dea picpic
        automatically matched to d1amp__
        complexed with na, zn
        1. region a:1-291 [131429] picpiclink
      4. 1amp picpic
        complexed with zn
        1. chain a [33837] picpiclink
      5. 2anp picpic
        complexed with na, zn; mutant
        1. region a:1-291 [127056] picpiclink
      6. 1xry picpic
        automatically matched to d1amp__
        complexed with bes, zn
        1. region a:1-291 [122268] picpiclink
      7. 1cp6 picpic
        complexed with bub, zn
        1. chain a [33838] picpiclink
      8. 2iq6 picpic
        automatically matched to d1ampa_
        complexed with zn
        1. region a:1-291 [147771] picpiclink
      9. 1txr picpic
        complexed with bes, zn
        1. chain a [107430] picpiclink
      10. 1igb picpic
        complexed with ipo, zn
        1. chain a [33839] picpiclink
      11. 1ft7 picpic
        complexed with k, plu, zn
        1. chain a [33840] picpiclink
      12. 2nyq picpic
        automatically matched to d1ampa_
        complexed with zn
        1. region a:1-291 [148517] picpiclink
      13. 2prq picpic
        automatically matched to d1amp__
        complexed with co, trs
        1. region a:1-291 [139750] picpiclink
    2. Streptomyces griseus [TaxId: 1911] [53207] (11)
      1. 1tkj picpic
        automatically matched to d1cp7a_
        complexed with ca, med, zn
        1. region a:1-277 [119296] picpiclink
      2. 1xbu picpic
        automatically matched to d1cp7a_
        complexed with ca, ioy, zn
        1. region a:1-277 [121841] picpiclink
      3. 1tkf picpic
        automatically matched to d1cp7a_
        complexed with ca, zn
        1. region a:1-277 [119294] picpiclink
      4. 1tkh picpic
        automatically matched to d1cp7a_
        complexed with ca, zn
        1. region a:1-277 [119295] picpiclink
      5. 1tf9 picpic
        automatically matched to d1cp7a_
        complexed with ca, zn
        1. region a:1-277 [119231] picpiclink
      6. 1tf8 picpic
        automatically matched to d1cp7a_
        complexed with ca, trp, zn
        1. region a:1-277 [119230] picpiclink
      7. 1qq9 picpic
        complexed with ca, met, zn
        1. chain a [33841] picpiclink
      8. 1cp7 picpic
        complexed with ca, zn
        1. chain a [33842] picpiclink
      9. 1f2o picpic
        complexed with ca, leu, zn
        1. chain a [59625] picpiclink
      10. 1xjo picpic
        complexed with ca, mho, po4, zn
        1. chain a [33843] picpiclink
      11. 1f2p picpic
        complexed with ca, phe, zn
        1. chain a [59626] picpiclink
  2. Aminopeptidase PepV [82450]
    unspecific amino dipeptidase
    1. Lactobacillus delbrueckii [TaxId: 1584] [82451] (1)
      1. 1lfw picpicxref
        complexed with aep, zn
        1. region a:1-186,a:383-468 [77942] picpiclink
  3. Carboxypeptidase G2, catalytic domain [53208]
    1. Pseudomonas sp., strain rs-16 [TaxId: 306] [53209] (1)
      1. 1cg2 picpicxref
        complexed with zn
        1. region a:26-213,a:327-414 [33844] picpiclink
        2. region b:26-213,b:327-414 [33845] picpiclink
        3. region c:26-213,c:327-414 [33846] picpiclink
        4. region d:26-213,d:327-414 [33847] picpiclink
  4. Peptidase T (tripeptidase), catalytic domain [75250]
    1. Salmonella typhimurium [TaxId: 90371] [75251] (1)
      1. 1fno picpicxref
        complexed with mse, so4, zn2
        1. region a:1-207,a:321-408 [75841] picpiclink
    2. Escherichia coli [TaxId: 562] [102506] (1)
      1. 1vix picpicxref
        structural genomics
        complexed with so4, zn
        1. region a:-1-207,a:321-409 [100777] picpiclink
        2. region b:-1-207,b:321-408 [100779] picpiclink
  5. Peptidase-like beta-alanine synthase, catalytic domain [102507]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [102508] (2)
      1. 1r3n picpicxref
        complexed with bib, zn
        1. region a:18-247,a:364-455 [96945] picpiclink
        2. region b:23-247,b:364-455 [96947] picpiclink
        3. region c:18-247,c:364-455 [96949] picpiclink
        4. region d:19-247,d:364-455 [96951] picpiclink
        5. region e:23-247,e:364-455 [96953] picpiclink
        6. region f:18-247,f:364-455 [96955] picpiclink
        7. region g:26-247,g:364-455 [96957] picpiclink
        8. region h:18-247,h:364-455 [96959] picpiclink
      2. 1r43 picpicxref
        complexed with bib, dtt, trs, zn
        1. region a:18-247,a:364-455 [96969] picpiclink
        2. region b:24-247,b:364-455 [96971] picpiclink
  6. Succinyl-diaminopimelate desuccinylase, catalytic domain [102509]
    1. Neisseria meningitidis [TaxId: 487] [102510] (1)
      1. 1vgy picpicxref
        structural genomics
        mutant
        1. region a:2-180,a:294-376 [100620] picpiclink
        2. region b:2-180,b:294-376 [100622] picpiclink
  7. Aminoacylase-1, catalytic domain [102511]
    1. Human (Homo sapiens) [TaxId: 9606] [102512] (1)
      1. 1q7l picpic
        catalytic domain only made of the two separate chains
        complexed with gly, zn; mutant
        1. chain a,b [96044] picpiclink
        2. chain c,d [96045] picpiclink
  8. Hypothetical protein YsdC, catalytic domain [102513]
    contains insert beta-barrel domain
    1. Bacillus subtilis [TaxId: 1423] [102514] (1)
      1. 1vhe picpicxref
        structural genomics
        complexed with zn
        1. region a:3-72,a:163-367 [100670] picpiclink
  9. Putative endoglucanase TM1048, catalytic domain [102515]
    contains insert beta-barrel domain
    1. Thermotoga maritima [TaxId: 2336] [102516] (1)
      1. 1vho picpicxref
        structural genomics
        complexed with cac, so4
        1. region a:3-69,a:153-333 [100695] picpiclink
  10. Frv operon protein FrvX, catalytic domain [117659]
    1. Pyrococcus horikoshii [TaxId: 53953] [117660] (3)
      SQ O59196 # PH1527
      1. 1y0y picpicxref
        automatically matched to 1Y0R A:164-351,A:6-72
        complexed with ati, zn
        1. region a:164-351,a:6-72 [122515] picpiclink
      2. 1y0r picpicxref
        complexed with ars, zn
        1. region a:164-351,a:6-72 [122511] picpiclink
      3. 1xfo picpicxref
        complexed with zn
        1. region a:6-72,a:164-353 [115266] picpiclink
        2. region b:6-72,b:164-353 [115268] picpiclink
        3. region c:6-72,c:164-353 [115270] picpiclink
        4. region d:6-72,d:164-353 [115272] picpiclink
  11. Probable aminopeptidase ApeA [117661]
    contains insert beta-barrel domain
    1. Borrelia burgdorferi [TaxId: 139] [117662] (1)
      SQ Q45055
      1. 1y7e picpicxref
        Structural genomics target; BB0366
        1. region a:4-100,a:234-458 [116533] picpiclink
  12. IAA-amino acid hydrolase, catalytic domain [117663]
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117664] (2)
      SQ P54970 37-428
      1. 1xmb picpicxref
        structural genomics target
        1. region a:37-215,a:335-428 [115479] picpiclink
      2. 2q43 picpicxref
        automatically matched to d1xmba1
        1. region a:16-194,a:314-407 [139821] picpiclink
  13. Deblocking aminopeptidase YhfE [142512]
    contains insert beta-barrel domain
    1. Bacillus cereus [TaxId: 1396] [142513] (16)
      SQ Q81HB5 3-73,187-348
      BC0901
      1. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with so4
        1. region a:3-73,a:187-348 [135529] picpiclink
      2. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region b:3-73,b:187-348 [135531] picpiclink
      3. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region c:3-73,c:187-348 [135533] picpiclink
      4. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region d:4-73,d:187-348 [135535] picpiclink
      5. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region e:3-73,e:187-348 [135537] picpiclink
      6. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region f:3-73,f:187-348 [135539] picpiclink
      7. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region g:4-73,g:187-348 [135541] picpiclink
      8. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region h:3-73,h:187-348 [135543] picpiclink
      9. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region i:4-73,i:187-348 [135545] picpiclink
      10. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region j:3-73,j:187-348 [135547] picpiclink
      11. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region k:3-73,k:187-348 [135549] picpiclink
      12. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region l:3-73,l:187-348 [135551] picpiclink
      13. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region m:3-73,m:187-348 [135553] picpiclink
      14. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region n:3-73,n:187-348 [135555] picpiclink
      15. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region o:5-73,o:187-348 [135557] picpiclink
      16. 2gre picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GRE A:3-73,A:187-348
        complexed with so4
        1. region p:3-73,p:187-348 [135559] picpiclink
  14. Allantoate amidohydrolase AllC catalytic domain [142514]
    1. Escherichia coli [TaxId: 562] [142515] (4)
      SQ P77425 2-210,328-411
      1. 1z2l picpicxrefxref
        complexed with 1al, so4, zn
        1. region a:4-212,a:330-413 [124383] picpiclink
      2. 1z2l picpicxrefxref
        automatically matched to 1Z2L A:4-212,A:330-413
        complexed with 1al, so4, zn
        1. region b:4-212,b:330-412 [124385] picpiclink
      3. 2imo picpicxrefxref
        automatically matched to 1Z2L A:4-212,A:330-413
        1. region a:4-212,a:330-413 [137515] picpiclink
      4. 2imo picpicxrefxref
        automatically matched to 1Z2L A:4-212,A:330-413
        1. region b:4-212,b:330-413 [137517] picpiclink
  15. Endoglucanase TM1049 [142516]
    1. Thermotoga maritima [TaxId: 2336] [142517] (1)
      SQ Q9X0D9 1-64,149-339
      1. 2fvg picpicxref
        complexed with edo
        1. region a:1-64,a:149-339 [134202] picpiclink
  16. Protein YxeP [142518]
    1. Bacillus subtilis [TaxId: 1423] [142519] (2)
      SQ P54955 4-177,293-379
      1. 1ysj picpicxrefxref
        complexed with ni; mutant
        1. region a:4-177,a:293-379 [123975] picpiclink
      2. 1ysj picpicxrefxref
        automatically matched to 1YSJ A:4-177,A:293-379
        complexed with ni; mutant
        1. region b:4-177,b:293-379 [123977] picpiclink
  17. Aminopeptidase YpdE [142520]
    1. Shigella flexneri [TaxId: 623] [142521] (6)
      SQ Q83K87 1-66,148-345
      hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
      1. 1ylo picpicxrefxrefxrefxrefxrefxref
        complexed with zn
        1. region a:1-66,a:148-345 [123660] picpiclink
      2. 1ylo picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YLO A:1-66,A:148-345
        complexed with zn
        1. region b:1-66,b:148-345 [123662] picpiclink
      3. 1ylo picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YLO A:1-66,A:148-345
        complexed with zn
        1. region c:1-66,c:148-345 [123664] picpiclink
      4. 1ylo picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YLO A:1-66,A:148-345
        complexed with zn
        1. region d:1-66,d:148-345 [123666] picpiclink
      5. 1ylo picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YLO A:1-66,A:148-345
        complexed with zn
        1. region e:1-66,e:148-345 [123668] picpiclink
      6. 1ylo picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YLO A:1-66,A:148-345
        complexed with zn
        1. region f:1-66,f:148-345 [123670] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk