Structural Classification of Proteins
Family: RecA protein-like (ATPase-domain)
core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a/b)
[51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold:
P-loop containing nucleoside triphosphate hydrolases
[52539]
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily:
P-loop containing nucleoside triphosphate hydrolases
[52540]
division into families based on beta-sheet topologies
uperfamily
Family:
RecA protein-like (ATPase-domain)
[52670]
core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest
Protein Domains:
RecA protein, ATPase-domain [52671]
C-terminal domain is alpha+beta
Escherichia coli
[TaxId: 562]
[52672] (7)
SQ
P0A7G6
P03017
1u94
complexed with ca
region a:6-268
[107743]
1xmv
complexed with adp, mg
region a:3-268
[115564]
1u98
complexed with gol, so4
region a:6-268
[107745]
1xms
complexed with anp, mn
region a:3-268
[115559]
2reb
region a:3-268
[32282]
1u99
complexed with po4
region a:6-268
[107747]
1rea
complexed with adp
region a:3-268
[32283]
Mycobacterium tuberculosis
[TaxId: 1773]
[52673] (6)
1mo6
complexed with dtp
region a:1-269
[79339]
1mo3
complexed with adp
region a:1-269
[79333]
1g19
complexed with po4
region a:1-269
[32284]
1mo5
complexed with sap
region a:1-269
[79337]
1mo4
complexed with sap
region a:1-269
[79335]
1g18
complexed with adp, alf
region a:3-269
[32285]
Mycobacterium smegmatis
[TaxId: 1772]
[89675] (4)
1ube
complexed with adp
region a:5-270
[88412]
1ubf
complexed with sap
region a:4-270
[88414]
1ubg
complexed with dtp
region a:1-270
[88416]
1ubc
region a:5-270
[88410]
Deinococcus radiodurans
[TaxId: 1299]
[117540] (1)
SQ
P42443
15-341
1xp8
complexed with sap
region a:15-282
[115735]
Gene 4 protein (g4p, DNA primase), helicase domain [52674]
Bacteriophage T7
[TaxId: 10760]
[52675] (7)
1cr2
chain a
[32288]
1cr1
chain a
[32286]
1cr0
chain a
[32287]
1cr4
chain a
[32289]
1e0j
complexed with anp, mg
chain a
[32290]
chain b
[32291]
chain c
[32292]
chain d
[32293]
chain e
[32294]
chain f
[32295]
1e0k
chain a
[32296]
chain b
[32297]
chain c
[32298]
chain d
[32299]
chain e
[32300]
chain f
[32301]
1q57
mutant
region a:264-549
[95867]
region b:264-549
[95869]
region c:264-549
[95871]
region d:264-549
[95873]
region e:264-549
[95875]
region f:264-549
[95877]
region g:264-549
[95879]
Hexameric replicative helicase repA [52676]
Escherichia coli
[TaxId: 562]
[52677] (3)
1nlf
complexed with so4
chain a
[85850]
chain b
[85851]
chain c
[85852]
1olo
complexed with so4
chain a
[93318]
chain b
[93319]
1g8y
chain a
[32302]
chain b
[32303]
chain c
[32304]
chain d
[32305]
chain e
[32306]
chain f
[32307]
chain g
[32308]
chain h
[32309]
chain i
[32310]
chain j
[32311]
chain k
[32312]
chain l
[32313]
Bacterial conjugative coupling protein TrwB [69492]
Escherichia coli
[TaxId: 562]
[69493] (5)
1e9r
complexed with so4; mutant
chain a
[64827]
chain b
[64828]
chain d
[64829]
chain e
[64830]
chain f
[64831]
chain g
[64832]
1e9s
mutant
chain a
[64833]
chain b
[64834]
chain d
[64835]
chain e
[64836]
chain f
[64837]
chain g
[64838]
chain h
[64839]
chain i
[64840]
chain j
[64841]
chain k
[64842]
chain l
[64843]
chain m
[64844]
1gl6
complexed with cl, epe, gnp; mutant
chain a
[70259]
chain b
[70260]
chain d
[70261]
chain e
[70262]
chain f
[70263]
chain g
[70264]
1gki
complexed with adp, epe, mg; mutant
chain a
[70221]
chain b
[70222]
chain d
[70223]
chain e
[70224]
chain f
[70225]
chain g
[70226]
1gl7
complexed with anp, cl; mutant
chain a
[70265]
chain b
[70266]
chain d
[70267]
chain e
[70268]
chain f
[70269]
chain g
[70270]
Hexameric traffic ATPase, HP0525 [52719]
type II/IV secretion system protein; includes N-terminal alpha+beta domain of a profilin-like topology
Helicobacter pylori
[TaxId: 210]
[52720] (6)
1g6o
structural genomics
complexed with adp, peg
chain a
[32430]
chain b
[32431]
2pt7
automatically matched to d1g6oa_
region a:6-328
[149834]
2pt7
automatically matched to d1g6oa_
region d:6-328
[149835]
1nly
complexed with 2pe, atg, mg, mse, so4
chain a
[85858]
chain b
[85859]
1opx
complexed with 2pe, mse, so4
chain a
[87243]
chain b
[87244]
1nlz
complexed with mse
chain a
[85860]
chain b
[85861]
chain c
[85862]
chain d
[85863]
chain e
[85864]
chain f
[85865]
Extracellular secretion NTPase EpsE [102375]
type II/IV secretion system protein; overall structure is similar to HP0525
Vibrio cholerae
[TaxId: 666]
[102376] (2)
1p9r
complexed with cl, zn
chain a
[94399]
1p9w
complexed with anp, zn
chain a
[94400]
DNA repair protein Rad51, catalytic domain [82412]
Human (Homo sapiens)
[TaxId: 9606]
[82413] (1)
1n0w
complex with BRCA2 BRC4 repeat peptide
complexed with cl, edo, mg, mse
chain a
[79772]
Archaeon Pyrococcus furiosus
[TaxId: 2261]
[102377] (1)
1pzn
complexed with gol, imd, mpd, so4
region a:96-349
[95457]
region b:96-349
[95458]
region c:96-349
[95459]
region d:96-349
[95460]
region e:96-349
[95461]
region f:96-349
[95462]
region g:96-349
[95463]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[110554] (1)
SQ
P25454
81-395
1szp
complexed with so4
region a:145-395
[106177]
region b:145-395
[106179]
region c:145-395
[106181]
region d:145-395
[106183]
region e:145-395
[106185]
region f:145-395
[106187]
Archaeon Methanococcus voltae
[TaxId: 2188]
[110555] (8)
SQ
O73948
2i1q
automatically matched to d1t4ga2
complexed with anp, ca, mg, na; mutant
region a:65-322
[136985]
1t4g
complexed with anp, mg; mutant
region a:65-322
[106419]
2f1j
automatically matched to d1t4ga2
complexed with adp, mg; mutant
region a:65-322
[132771]
2b21
automatically matched to d1t4ga2
complexed with anp, k, mg; mutant
region a:65-322
[127688]
1xu4
complexed with anp, k, mg; mutant
region a:65-322
[116046]
2gdj
automatically matched to d1t4ga2
complexed with anp, mg
region a:65-322
[135018]
2f1i
automatically matched to d1t4ga2
complexed with anp, mg; mutant
region a:65-322
[132769]
2f1h
automatically matched to d1t4ga2
complexed with anp, k, mg; mutant
region a:65-322
[132767]
Central domain of alpha subunit of F1 ATP synthase [88774]
Cow (Bos taurus)
[TaxId: 9913]
[88775] (18)
SQ
P19483
2jdi
automatically matched to d1bmfa3
complexed with anp, mg
region a:95-379
[145685]
2jdi
automatically matched to d1bmfa3
complexed with anp, mg
region b:95-379
[145688]
2jdi
automatically matched to d1bmfa3
complexed with anp, mg
region c:95-379
[145691]
2ck3
automatically matched to d1bmfa3
complexed with adp, anp, azi, mg, po4
region a:95-379
[145035]
2ck3
automatically matched to d1bmfa3
complexed with adp, anp, azi, mg, po4
region b:95-379
[145038]
2ck3
automatically matched to d1bmfa3
complexed with adp, anp, azi, mg, po4
region c:95-379
[145041]
1w0j
complexed with adp, bef, gol, mo3, mo4, po4
region a:95-379
[108991]
region b:95-379
[108994]
region c:95-379
[108997]
1e79
complexed with adp, atp, cry, glh, mg, so4
region a:95-379
[32314]
region b:95-379
[32315]
region c:95-379
[32316]
1w0k
complexed with adp, gol, mg, po4
region a:95-379
[109010]
region b:95-379
[109013]
region c:95-379
[109016]
1h8e
complexed with adp, alf, gol, mg, so4
region a:95-379
[60740]
region b:95-379
[60743]
region c:95-379
[60746]
1nbm
complexed with adp, atp, mg, po4, tyn
region a:95-379
[32332]
region b:95-379
[32333]
region c:95-379
[32334]
1e1r
complexed with adp, af3, anp, mg, po4
region a:95-379
[32320]
region b:95-379
[32321]
region c:95-379
[32322]
1bmf
complexed with adp, anp, mg
region a:95-379
[32326]
region b:95-379
[32327]
region c:95-379
[32328]
1e1q
complexed with adp, anp, mg, po4
region a:95-379
[32338]
region b:95-379
[32339]
region c:95-379
[32340]
1efr
complexed with adp, anp, app, bal, cpi, mg, tlx
region a:95-379
[32344]
region b:95-379
[32345]
region c:95-379
[32346]
1ohh
complexed with anp, mg
region a:95-379
[87017]
region b:95-379
[87020]
region c:95-379
[87023]
1h8h
complexed with adp, atp, gol, mg, po4
region a:95-379
[60761]
region b:95-379
[60764]
region c:95-379
[60767]
1cow
complexed with adp, anp, aur, mg
region a:95-379
[32350]
region b:95-379
[32351]
region c:95-379
[32352]
Rat (Rattus norvegicus)
[TaxId: 10116]
[88776] (2)
1mab
complexed with adp, atp, mg, po4
region a:95-379
[32356]
2f43
automatically matched to d1maba3
complexed with adp, atp, mg, vo4
region a:95-379
[145133]
Bacillus sp., strain ps3
[TaxId: 1409]
[88777] (1)
1sky
complexed with so4
region b:96-371
[32358]
Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]
[88778] (2)
1fx0
region a:97-372
[60082]
1kmh
complexed with ttx
region a:97-372
[72747]
Central domain of beta subunit of F1 ATP synthase [88779]
Cow (Bos taurus)
[TaxId: 9913]
[88780] (12)
SQ
P00829
1w0j
complexed with adp, bef, gol, mo3, mo4, po4
region d:82-357
[109000]
region e:82-357
[109003]
region f:82-357
[109006]
1e79
complexed with adp, atp, cry, glh, mg, so4
region d:82-357
[32317]
region e:82-357
[32318]
region f:82-357
[32319]
1w0k
complexed with adp, gol, mg, po4
region d:82-357
[109019]
region e:82-357
[109022]
region f:82-357
[109025]
1h8e
complexed with adp, alf, gol, mg, so4
region d:82-357
[60749]
region e:82-357
[60752]
region f:82-357
[60755]
1nbm
complexed with adp, atp, mg, po4, tyn
region d:82-357
[32335]
region e:82-357
[32336]
region f:82-357
[32337]
1e1r
complexed with adp, af3, anp, mg, po4
region d:82-357
[32323]
region e:82-357
[32324]
region f:82-357
[32325]
1bmf
complexed with adp, anp, mg
region d:82-357
[32329]
region e:82-357
[32330]
region f:82-357
[32331]
1e1q
complexed with adp, anp, mg, po4
region d:82-357
[32341]
region e:82-357
[32342]
region f:82-357
[32343]
1efr
complexed with adp, anp, app, bal, cpi, mg, tlx
region d:82-357
[32347]
region e:82-357
[32348]
region f:82-357
[32349]
1ohh
complexed with anp, mg
region d:82-357
[87026]
region e:82-357
[87029]
region f:82-357
[87032]
1h8h
complexed with adp, atp, gol, mg, po4
region d:82-357
[60770]
region e:82-357
[60773]
region f:82-357
[60776]
1cow
complexed with adp, anp, aur, mg
region d:82-357
[32353]
region e:82-357
[32354]
region f:82-357
[32355]
Rat (Rattus norvegicus)
[TaxId: 10116]
[88781] (8)
2jdi
automatically matched to d1mabb3
complexed with anp, mg
region d:82-357
[138265]
2jdi
automatically matched to d1mabb3
complexed with anp, mg
region e:82-357
[138268]
2jdi
automatically matched to d1mabb3
complexed with anp, mg
region f:82-357
[138271]
2ck3
automatically matched to d1mabb3
complexed with adp, anp, azi, mg, po4
region d:82-357
[130555]
2ck3
automatically matched to d1mabb3
complexed with adp, anp, azi, mg, po4
region e:82-357
[130558]
2ck3
automatically matched to d1mabb3
complexed with adp, anp, azi, mg, po4
region f:82-357
[130561]
1mab
complexed with adp, atp, mg, po4
region b:82-357
[32357]
2f43
automatically matched to d1mabb3
complexed with adp, atp, mg, vo4
region b:82-357
[132910]
Bacillus sp., strain ps3
[TaxId: 1409]
[88782] (1)
1sky
complexed with so4
region e:83-356
[32359]
Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]
[88783] (2)
1fx0
region b:98-377
[60085]
1kmh
complexed with ttx
region b:98-377
[72750]
Transcription termination factor Rho, ATPase domain [89676]
Escherichia coli
[TaxId: 562]
[89677] (10)
SQ
P03002
1xpu
complexed with ags, fpd, mg
region a:129-417
[115792]
region b:129-417
[115795]
region c:129-417
[115798]
region d:129-417
[115801]
region e:129-417
[115804]
region f:129-417
[115807]
1xpr
complexed with ags, fb, mg
region a:129-417
[115774]
region b:129-417
[115777]
region c:129-417
[115780]
region d:129-417
[115783]
region e:129-417
[115786]
region f:129-417
[115789]
1pvo
complexed with anp
region a:129-417
[88318]
region b:129-417
[88320]
region c:129-417
[88323]
region d:129-417
[88326]
region e:129-417
[88329]
region f:129-417
[88332]
1pv4
complexed with mse
region a:129-417
[88297]
region b:129-417
[88299]
region c:129-417
[88302]
region d:129-417
[88305]
region e:129-417
[88308]
region f:129-417
[88311]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region a:130-417
[122214]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region b:130-417
[122217]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region c:130-417
[122220]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region d:130-417
[122223]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region e:130-417
[122226]
1xpo
automatically matched to d1pv4a3
complexed with ags, bcm, mg
region f:130-417
[122229]
Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU [52682]
lacks the last strand 8
Salmonella typhimurium
[TaxId: 90371]
[52683] (2)
1c9k
complexed with 5gp, mg, po4, pop
chain a
[32363]
chain b
[32364]
chain c
[32365]
1cbu
complexed with so4
chain a
[32360]
chain b
[32361]
chain c
[32362]
ATP:corrinoid adenosyltransferase CobA [52684]
lacks the two last strands
Salmonella typhimurium
[TaxId: 90371]
[52685] (3)
1g5t
complexed with atp, mg
chain a
[32366]
1g5r
complexed with cl
chain a
[32367]
1g64
complexed with atp, b12, mg
chain a
[32368]
chain b
[32369]
Meiotic recombination protein DMC1/LIM15 homolog [110556]
Human (Homo sapiens)
[TaxId: 9606]
[110557] (1)
SQ
Q14565
1v5w
chain a
[108387]
chain b
[108388]
Circadian clock protein KaiC [110558]
duplication: contains two copies of this domain
Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2)
[TaxId: 1140]
[110559] (25)
SQ
Q79PF4
14-497
1tf7
complexed with atp
region a:14-255
[106838]
region a:256-497
[106839]
region b:14-255
[106840]
region b:256-497
[106841]
region c:14-255
[106842]
region c:256-497
[106843]
region d:14-255
[106844]
region d:256-497
[106845]
region e:14-255
[106846]
region e:256-497
[106847]
region f:14-255
[106848]
region f:256-497
[106849]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region a:14-255
[119637]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region a:256-497
[119638]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region b:14-255
[119639]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region b:256-497
[119640]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region c:14-255
[119641]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region c:256-497
[119642]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region d:14-255
[119643]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region d:256-497
[119644]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region e:14-255
[119645]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region e:256-497
[119646]
1u9i
automatically matched to d1tf7a1
complexed with atp, mg; mutant
region f:14-255
[119647]
1u9i
automatically matched to d1tf7a2
complexed with atp, mg; mutant
region f:256-497
[119648]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region a:14-255
[134911]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region a:256-497
[134912]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region b:14-255
[134913]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region b:256-497
[134914]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region c:14-255
[134915]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region c:256-497
[134916]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region d:14-255
[134917]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region d:256-497
[134918]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region e:14-255
[134919]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region e:256-497
[134920]
2gbl
automatically matched to d1tf7a1
complexed with atp, mg
region f:14-255
[134921]
2gbl
automatically matched to d1tf7a2
complexed with atp, mg
region f:256-497
[134922]
NTPase P4 [117541]
contains extra N-terminal subdomain (~100 residues): [contains pseudo beta-barrel]
Bacteriophage phi-12
[TaxId: 161736]
[117542] (8)
SQ
Q94M05
1w44
complexed with adp
chain a
[114147]
chain b
[114148]
chain c
[114149]
1w48
complexed with apc
chain a
[114156]
chain b
[114157]
chain c
[114158]
1w49
complexed with apc, mg
chain a
[114159]
chain b
[114160]
chain c
[114161]
1w4b
complexed with adp, mg
chain a
[114165]
chain b
[114166]
chain c
[114167]
1w4a
complexed with apc, mn
chain a
[114162]
chain b
[114163]
chain c
[114164]
1w47
complexed with adp, mn
chain a
[114153]
chain b
[114154]
chain c
[114155]
1w4c
chain a
[114168]
chain b
[114169]
chain c
[114170]
chain d
[114171]
chain e
[114172]
chain f
[114173]
chain g
[114174]
chain h
[114175]
chain i
[114176]
chain j
[114177]
chain k
[114178]
chain l
[114179]
chain m
[114180]
chain n
[114181]
chain o
[114182]
chain p
[114183]
chain q
[114184]
chain r
[114185]
chain s
[114186]
chain t
[114187]
chain u
[114188]
chain v
[114189]
chain w
[114190]
chain x
[114191]
1w46
complexed with adp, mg
chain a
[114150]
chain b
[114151]
chain c
[114152]
Hypothetical kinase-like protein Aq_1292 [142301]
member of
Pfam 03266
(DUF265)
Aquifex aeolicus
[TaxId: 63363]
[142302] (1)
SQ
O67322
1-178
1ye8
complexed with mg, na, po4; mutant
region a:1-178
[123010]
Cancer-related NTPase, C1orf57 [159566]
member of
Pfam 03266
; DUF265
Human (Homo sapiens)
[TaxId: 9606]
[159567] (1)
SQ
Q5TDE9
2-190
2i3b
region a:1-189
[147497]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk