Structural Classification of Proteins
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Family: D-glucarate dehydratase-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Enolase C-terminal domain-like [51604]
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
    link to SUPERFAMILY database - Superfamily
  5. Family: D-glucarate dehydratase-like [51609]

Protein Domains:

  1. D-glucarate dehydratase [51610]
    1. Pseudomonas putida [TaxId: 303] [51611] (1) picpic
    2. Escherichia coli [TaxId: 562] [51612] (6) picpic
  2. O-succinylbenzoate synthase [51613]
    1. Escherichia coli [TaxId: 562] [51614] (7) picpic
  3. Muconate-lactonizing enzyme [51615]
    1. Pseudomonas putida [TaxId: 303] [51616] (5) picpic
  4. Mandelate racemase [51617]
    1. Pseudomonas putida [TaxId: 303] [51618] (6) picpic
  5. Chlormuconate cycloisomerase [51619]
    1. Alcaligenes eutrophus [TaxId: 106590] [51620] (2) picpic
    2. Pseudomonas sp. p51 [TaxId: 65067] [102096] (1) picpic
  6. L-Ala-D/L-Glu epimerase [69397]
    1. Escherichia coli [TaxId: 562] [69398] (1) picpic
    2. Bacillus subtilis [TaxId: 1423] [69399] (2) picpic
      SQ O34508
  7. beta-Methylaspartase [69400]
    1. Clostridium tetanomorphum [TaxId: 1553] [69401] (2) picpic
    2. Citrobacter amalonaticus [TaxId: 35703] [69402] (2) picpic
  8. Hypothetical protein Atu3453 [102097]
    1. Agrobacterium tumefaciens [TaxId: 358] [102098] (1) picpic
  9. N-acylamino acid racemase [110372]
    1. Amycolatopsis sp. [TaxId: 37632] [110373] (4) picpic
      SQ Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    2. Deinococcus radiodurans [TaxId: 1299] [110374] (4) picpic
      SQ Q9RYA6
    3. Enterococcus faecalis [TaxId: 1351] [117382] (1) picpic
      SQ Q838J7; EF0450; protein assignment by sequence similarity
    4. Listeria innocua [TaxId: 1642] [117383] (1) picpic
      SQ Q927X3; Lin2664; protein assignment by sequence similarity
  10. Hypothetical protein Bll6730 [117384]
    1. Bradyrhizobium japonicum [TaxId: 375] [117385] (21) picpic
      SQ Q89FH0
  11. RTS beta protein [117386]
    1. Xanthomonas campestris pv. campestris [TaxId: 340] [117387] (1) picpic
      SQ Q8P3K2; extended, mainly helical linker between the domains
  12. Hypothetical protein YitF [141844]
    1. Bacillus subtilis [TaxId: 1423] [141845] (10) picpic
      SQ O06741 115-371
  13. Putative dehydratase protein STM2273 [141846]
    1. Salmonella typhimurium [TaxId: 90371] [141847] (2) picpic
      SQ Q8ZNH1 123-400
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk