Structural Classification of Proteins
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Family: D-glucarate dehydratase-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Enolase C-terminal domain-like [51604]
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
    link to SUPERFAMILY database - Superfamily
  5. Family: D-glucarate dehydratase-like [51609]

Protein Domains:

  1. D-glucarate dehydratase [51610]
    1. Pseudomonas putida [TaxId: 303] [51611] (1)
      1. 1bqg picpicxref
        1. region a:144-422 [29217] picpiclink
    2. Escherichia coli [TaxId: 562] [51612] (6)
      1. 1jdf picpicxref
        complexed with ipa, kgr, mg; mutant
        1. region a:138-446 [62897] picpiclink
        2. region b:138-446 [62899] picpiclink
        3. region c:138-446 [62901] picpiclink
        4. region d:138-446 [62903] picpiclink
      2. 1ec7 picpicxref
        complexed with ipa, mg
        1. region a:138-446 [29218] picpiclink
        2. region b:138-446 [29219] picpiclink
        3. region c:138-446 [29220] picpiclink
        4. region d:138-446 [29221] picpiclink
      3. 1ec8 picpicxref
        complexed with glr, ipa, mg
        1. region a:138-446 [29222] picpiclink
        2. region b:138-446 [29223] picpiclink
        3. region c:138-446 [29224] picpiclink
        4. region d:138-446 [29225] picpiclink
      4. 1ec9 picpicxref
        complexed with ipa, mg, xyh
        1. region a:138-446 [29226] picpiclink
        2. region b:138-446 [29227] picpiclink
        3. region c:138-446 [29228] picpiclink
        4. region d:138-446 [29229] picpiclink
      5. 1ecq picpicxref
        complexed with dxg, ipa, mg
        1. region a:138-446 [29230] picpiclink
        2. region b:138-446 [29231] picpiclink
        3. region c:138-446 [29232] picpiclink
        4. region d:138-446 [29233] picpiclink
      6. 1jct picpicxref
        complexed with gkr, ipa, mg; mutant
        1. region a:138-446 [62882] picpiclink
        2. region b:138-446 [62884] picpiclink
  2. O-succinylbenzoate synthase [51613]
    1. Escherichia coli [TaxId: 562] [51614] (7)
      1. 1r6w picpicxref
        complexed with 164, mg; mutant
        1. region a:100-320 [97165] picpiclink
      2. 1fhu picpicxref
        1. region a:100-320 [29234] picpiclink
      3. 1fhv picpicxref
        complexed with mg, osb
        1. region a:100-320 [29235] picpiclink
      4. 2ofj picpicxrefxrefxrefxref
        automatically matched to d1fhua1
        mutant
        1. region a:100-320 [139044] picpiclink
      5. 2ofj picpicxrefxrefxrefxref
        automatically matched to d1fhua1
        mutant
        1. region b:100-320 [139046] picpiclink
      6. 2ofj picpicxrefxrefxrefxref
        automatically matched to d1fhua1
        mutant
        1. region c:100-320 [139048] picpiclink
      7. 2ofj picpicxrefxrefxrefxref
        automatically matched to d1fhua1
        mutant
        1. region d:100-320 [139050] picpiclink
  3. Muconate-lactonizing enzyme [51615]
    1. Pseudomonas putida [TaxId: 303] [51616] (5)
      1. 1muc picpicxref
        complexed with mn
        1. region a:131-372 [29236] picpiclink
        2. region b:131-372 [29237] picpiclink
      2. 1bkh picpicxref
        1. region a:131-372 [29238] picpiclink
        2. region b:131-372 [29239] picpiclink
        3. region c:131-372 [29240] picpiclink
      3. 3muc picpicxref
        complexed with mn; mutant
        1. region a:131-372 [29243] picpiclink
        2. region b:131-372 [29244] picpiclink
      4. 2muc picpicxref
        complexed with mn; mutant
        1. region a:131-372 [29241] picpiclink
        2. region b:131-372 [29242] picpiclink
      5. 1f9c picpicxref
        complexed with mn; mutant
        1. region a:131-372 [59728] picpiclink
        2. region b:131-372 [59730] picpiclink
  4. Mandelate racemase [51617]
    1. Pseudomonas putida [TaxId: 303] [51618] (6)
      1. 2mnr picpicxref
        complexed with mn, so4
        1. region a:133-359 [29245] picpiclink
      2. 1mns picpicxref
        complexed with apg, mg
        1. region a:133-359 [29246] picpiclink
      3. 1mdr picpicxref
        complexed with mg, saa
        1. region a:133-359 [29248] picpiclink
      4. 1mdl picpicxref
        complexed with mg, rmn, smn; mutant
        1. region a:133-359 [29247] picpiclink
      5. 1dtn picpicxref
        complexed with mg, saa; mutant
        1. region a:133-359 [29249] picpiclink
      6. 1mra picpicxref
        complexed with mg, saa; mutant
        1. region a:133-359 [29250] picpiclink
  5. Chlormuconate cycloisomerase [51619]
    1. Alcaligenes eutrophus [TaxId: 106590] [51620] (2)
      1. 2chr picpicxref
        complexed with cl, mn
        1. region a:127-370 [29251] picpiclink
      2. 1chr picpicxref
        complexed with cl, mn
        1. region a:127-370 [29252] picpiclink
        2. region b:127-370 [29253] picpiclink
    2. Pseudomonas sp. p51 [TaxId: 65067] [102096] (1)
      1. 1nu5 picpicxref
        complexed with mn
        1. region a:127-369 [92183] picpiclink
  6. L-Ala-D/L-Glu epimerase [69397]
    1. Escherichia coli [TaxId: 562] [69398] (1)
      1. 1jpd picpicxref
        mutant
        1. region x:114-321 [67014] picpiclink
    2. Bacillus subtilis [TaxId: 1423] [69399] (2)
      SQ O34508
      1. 1jpm picpicxref
        complexed with gol, mg
        1. region a:126-359 [67031] picpiclink
        2. region b:126-359 [67033] picpiclink
        3. region c:126-358 [67035] picpiclink
        4. region d:126-358 [67037] picpiclink
      2. 1tkk picpicxref
        complexed with ala, glu, mg
        1. region a:126-358 [107089] picpiclink
        2. region b:126-358 [107091] picpiclink
        3. region c:126-358 [107093] picpiclink
        4. region d:126-358 [107095] picpiclink
        5. region e:126-358 [107097] picpiclink
        6. region f:126-358 [107099] picpiclink
        7. region g:126-358 [107101] picpiclink
        8. region h:126-358 [107103] picpiclink
  7. beta-Methylaspartase [69400]
    1. Clostridium tetanomorphum [TaxId: 1553] [69401] (2)
      1. 1kcz picpicxref
        complexed with edo, mg
        1. region a:161-413 [68451] picpiclink
        2. region b:161-413 [68453] picpiclink
      2. 1kd0 picpicxref
        complexed with edo
        1. region a:161-413 [68455] picpiclink
        2. region b:161-413 [68457] picpiclink
    2. Citrobacter amalonaticus [TaxId: 35703] [69402] (2)
      1. 1kko picpicxref
        complexed with sul
        1. region a:161-411 [68675] picpiclink
        2. region b:161-411 [68677] picpiclink
      2. 1kkr picpicxref
        complexed with 3md, mg
        1. region a:161-411 [68683] picpiclink
        2. region b:161-411 [68685] picpiclink
  8. Hypothetical protein Atu3453 [102097]
    1. Agrobacterium tumefaciens [TaxId: 358] [102098] (1)
      1. 1rvk picpicxref
        structural genomics
        complexed with mg
        1. region a:127-381 [97928] picpiclink
  9. N-acylamino acid racemase [110372]
    1. Amycolatopsis sp. [TaxId: 37632] [110373] (4)
      SQ Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
      1. 1sjd picpicxref
        complexed with npg
        1. region a:126-367 [105632] picpiclink
        2. region b:126-368 [105634] picpiclink
        3. region c:126-367 [105636] picpiclink
        4. region d:126-367 [105638] picpiclink
      2. 1sjc picpicxref
        complexed with mg, smg
        1. region a:126-367 [105624] picpiclink
        2. region b:126-368 [105626] picpiclink
        3. region c:126-367 [105628] picpiclink
        4. region d:126-368 [105630] picpiclink
      3. 1sjb picpicxref
        complexed with mg, osb
        1. region a:126-367 [105616] picpiclink
        2. region b:126-368 [105618] picpiclink
        3. region c:126-367 [105620] picpiclink
        4. region d:126-368 [105622] picpiclink
      4. 1sja picpicxref
        complexed with ame, mg
        1. region a:126-368 [105608] picpiclink
        2. region b:126-368 [105610] picpiclink
        3. region c:126-368 [105612] picpiclink
        4. region d:126-368 [105614] picpiclink
    2. Deinococcus radiodurans [TaxId: 1299] [110374] (4)
      SQ Q9RYA6
      1. 1r0m picpicxref
        1. region a:133-375 [104747] picpiclink
        2. region b:133-375 [104749] picpiclink
        3. region c:133-375 [104751] picpiclink
        4. region d:133-375 [104753] picpiclink
      2. 2fkp picpicxref
        mutant
        1. region a:133-375 [133665] picpiclink
      3. 1xpy picpicxref
        complexed with mg, nlq
        1. region a:133-375 [115810] picpiclink
        2. region b:133-375 [115812] picpiclink
        3. region c:133-375 [115814] picpiclink
        4. region d:133-375 [115816] picpiclink
      4. 1xs2 picpicxref
        complexed with mg
        1. region a:133-375 [115898] picpiclink
        2. region b:133-375 [115900] picpiclink
        3. region c:133-375 [115902] picpiclink
        4. region d:133-375 [115904] picpiclink
    3. Enterococcus faecalis [TaxId: 1351] [117382] (1)
      SQ Q838J7; EF0450; protein assignment by sequence similarity
      1. 1wue picpicxref
        Structural genomics target
        1. region a:1127-1367 [114892] picpiclink
        2. region b:2127-2367 [114894] picpiclink
    4. Listeria innocua [TaxId: 1642] [117383] (1)
      SQ Q927X3; Lin2664; protein assignment by sequence similarity
      1. 1wuf picpicxref
        Structural genomics target
        complexed with mg
        1. region a:1127-1370 [114896] picpiclink
        2. region b:2127-2370 [114898] picpiclink
  10. Hypothetical protein Bll6730 [117384]
    1. Bradyrhizobium japonicum [TaxId: 375] [117385] (21)
      SQ Q89FH0
      1. 1tzz picpicxref
        Structural genomics target
        complexed with mg
        1. region a:1146-1392 [112896] picpiclink
        2. region b:2146-2392 [112898] picpiclink
      2. 2dw6 picpicxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, tar, tla; mutant
        1. region a:143-389 [131808] picpiclink
      3. 2dw6 picpicxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, tar, tla; mutant
        1. region b:143-389 [131810] picpiclink
      4. 2dw6 picpicxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, tar, tla; mutant
        1. region c:143-389 [131812] picpiclink
      5. 2dw6 picpicxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, tar, tla; mutant
        1. region d:143-389 [131814] picpiclink
      6. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region a:143-389 [131816] picpiclink
      7. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region b:143-389 [131818] picpiclink
      8. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region c:143-389 [131820] picpiclink
      9. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region d:143-389 [131822] picpiclink
      10. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region e:143-389 [131824] picpiclink
      11. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region f:143-389 [131826] picpiclink
      12. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region g:143-389 [131828] picpiclink
      13. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region h:143-389 [131830] picpiclink
      14. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region i:143-389 [131832] picpiclink
      15. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region j:143-389 [131834] picpiclink
      16. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region k:143-389 [131836] picpiclink
      17. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region l:143-389 [131838] picpiclink
      18. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region m:143-389 [131840] picpiclink
      19. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region n:143-389 [131842] picpiclink
      20. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region o:143-389 [131844] picpiclink
      21. 2dw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1tzza1
        complexed with mg, srt
        1. region p:143-389 [131846] picpiclink
  11. RTS beta protein [117386]
    1. Xanthomonas campestris pv. campestris [TaxId: 340] [117387] (1)
      SQ Q8P3K2; extended, mainly helical linker between the domains
      1. 1yey picpicxref
        Structural genomics target
        complexed with mg
        1. region a:184-435 [116664] picpiclink
        2. region b:184-432 [116666] picpiclink
        3. region c:184-435 [116668] picpiclink
        4. region d:184-435 [116670] picpiclink
  12. Hypothetical protein YitF [141844]
    1. Bacillus subtilis [TaxId: 1423] [141845] (10)
      SQ O06741 115-371
      1. 2gdq picpicxrefxref
        1. region a:119-374 [135020] picpiclink
      2. 2gdq picpicxrefxref
        automatically matched to 2GDQ A:119-374
        1. region b:119-374 [135022] picpiclink
      3. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region a:119-374 [135128] picpiclink
      4. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region b:119-374 [135130] picpiclink
      5. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region c:119-374 [135132] picpiclink
      6. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region d:119-374 [135134] picpiclink
      7. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region e:119-374 [135136] picpiclink
      8. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region f:119-374 [135138] picpiclink
      9. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region g:119-374 [135140] picpiclink
      10. 2gge picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2GDQ A:119-374
        complexed with cl, mg
        1. region h:119-374 [135142] picpiclink
  13. Putative dehydratase protein STM2273 [141846]
    1. Salmonella typhimurium [TaxId: 90371] [141847] (2)
      SQ Q8ZNH1 123-400
      1. 2gl5 picpicxrefxref
        complexed with gol, mg; mutant
        1. region a:123-400 [135336] picpiclink
      2. 2gl5 picpicxrefxref
        automatically matched to 2GL5 A:123-400
        complexed with gol, mg; mutant
        1. region b:123-400 [135338] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk