Structural Classification of Proteins
home mail help root up expand collapse

Protein: Rhinovirus coat proteins from Human rhinovirus A 2 (HRV-2) [TaxId: 12130]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634]
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. Protein: Rhinovirus coat proteins [49670]
  7. Species: Human rhinovirus A 2 (HRV-2) [TaxId: 12130] [49674]

PDB Entry Domains:

  1. 1fpn picpic
    complexed with dao
    1. chain 4,2 [83053] picpiclink
    2. chain 3 [23551] picpiclink
    3. chain 1 [23549] picpiclink
  2. 1v9u picpicxref
    complexed with ca, dao
    1. chain 4,2 [100550] picpiclink
    2. chain 3 [100552] picpiclink
    3. chain 1 [100551] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk