Structural Classification of Proteins

Family: Germin/Seed storage 7S protein

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Double-stranded beta-helix [51181]
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology
Superfamily: RmlC-like cupins [51182]
uperfamily
Family: Germin/Seed storage 7S protein [51187]

Protein Domains:

Germin [63853]
Metal (manganese)-binding protein with oxalate oxidase and superoxide dismutase activities; homohexamer
1. Barley (Hordeum vulgare) [TaxId: 4513] [63854] (5)
  1. 2et1
    automatically matched to d1fi2a_
    complexed with glv, mn
    1. region a:1-201 [132351]
  2. 1fi2
    complexed with mn
    1. chain a [59845]
  3. 2et7
    complexed with mn; mutant
    1. region a:1-201 [132352]
  4. 2ete
    complexed with glv, mn, nag
    1. region a:1-201 [132354]
  5. 2ete
    automatically matched to 2ETE A:1-201
    complexed with glv, mn, nag
    1. region b:1-201 [132355]
Auxin binding protein [75030]
1. Maize (Zea mays) [TaxId: 4577] [75031] (2)
  1. 1lrh
    complexed with man, nag, nla, zn; mutant
    1. chain a [74219]
    2. chain b [74220]
    3. chain c [74221]
    4. chain d [74222]
  2. 1lr5
    complexed with man, nag, zn; mutant
    1. chain a [74215]
    2. chain b [74216]
    3. chain c [74217]
    4. chain d [74218]
Seed storage 7S protein [51188]
duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer
1. French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885] [51189] (2)
  1. 2phl
    complexed with nag, po4
    1. region a:11-210 [28082]
    2. region a:220-381 [28083]
    3. region b:11-210 [28084]
    4. region b:220-381 [28085]
    5. region c:10-210 [28086]
    6. region c:220-381 [28087]
  2. 1phs
    CA-atoms only
    1. region a:11-212 [28088]
    2. region a:220-381 [28089]
2. Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823] [51190] (8)
  1. 1dgw
    1. chain a [28090]
    2. chain x,y [28091]
  2. 2cau
    1. region a:46-223 [28092]
    2. region a:246-421 [28093]
  3. 1dgr
    1. chain a [28096]
    2. chain x,y [28097]
    3. chain b [28098]
    4. chain v,w [28099]
    5. chain c [28100]
    6. chain n,m [144355]
  4. 2cav
    1. region a:46-225 [28094]
    2. region a:246-422 [28095]
  5. 1cau
    1. chain a [28102]
    2. chain b [28103]
  6. 1cax
    1. chain a [28104]
    2. chain b [28105]
    3. chain c [28106]
    4. chain d [28107]
    5. chain e [28108]
    6. chain f [28109]
  7. 1cav
    1. chain a [28110]
    2. chain b [28111]
  8. 1caw
    1. chain a [28112]
    2. chain b [28113]
3. Soybean (Glycine max), proglycinin [TaxId: 3847] [69345] (3)
  1. 1fxz
    1. region a:10-248 [65059]
    2. region a:297-470 [65060]
    3. region b:10-248 [65061]
    4. region b:297-470 [65062]
    5. region c:10-248 [65063]
    6. region c:297-470 [65064]
  2. 1ucx
    mutant
    1. region a:14-248 [99192]
    2. region a:297-470 [99193]
    3. region b:14-248 [99194]
    4. region b:297-470 [99195]
    5. region c:14-248 [99196]
    6. region c:297-470 [99197]
  3. 1ud1
    mutant
    1. region a:10-248 [99202]
    2. region a:297-470 [99203]
    3. region b:10-248 [99204]
    4. region b:297-470 [99205]
    5. region c:10-248 [99206]
    6. region c:297-470 [99207]
4. Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847] [109608] (3)
  SQ P25974
  1. 1uij
    mutant
    1. region a:6-175 [107866]
    2. region a:183-392 [107867]
    3. region b:6-175 [107868]
    4. region b:183-392 [107869]
    5. region c:6-175 [107870]
    6. region c:183-392 [107871]
    7. region d:6-175 [107872]
    8. region d:183-392 [107873]
    9. region e:6-175 [107874]
    10. region e:183-392 [107875]
    11. region f:6-175 [107876]
    12. region f:183-392 [107877]
  2. 1ipj
    complexed with nag
    1. region a:9-176 [71258]
    2. region a:183-393 [71259]
    3. region b:9-175 [71260]
    4. region b:186-393 [71261]
    5. region c:9-177 [71262]
    6. region c:181-393 [71263]
  3. 1ipk
    1. region a:8-174 [71264]
    2. region a:183-392 [71265]
    3. region b:9-174 [71266]
    4. region b:183-392 [71267]
    5. region c:3-180 [71268]
    6. region c:181-392 [71269]
5. Soybean (Glycine max), glycinin A3B4 [TaxId: 3847] [89412] (1)
  1. 1od5
    complexed with co3, mg
    1. region a:7-251 [86832]
    2. region a:321-493 [86833]
    3. region b:7-251 [86834]
    4. region b:321-493 [86835]
6. Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847] [110313] (1)
  SQ Q7XXT2 204-621
  1. 1uik
    complexed with mg
    1. region a:148-350 [107878]
    2. region a:351-535 [107879]
    3. region b:148-350 [107880]
    4. region b:351-535 [107881]
    5. region c:148-350 [107882]
    6. region c:351-535 [107883]
Oxalate decarboxylase OxdC (YvrK) [75033]
duplication: consists of two germin-like metal-ion binding domains
1. Bacillus subtilis [TaxId: 1423] [75034] (3)
  1. 1j58
    complexed with fmt, mg, mn, mse
    1. chain a [71531]
  2. 1uw8
    complexed with mn, trs
    1. chain a [100100]
  3. 1l3j
    complexed with fmt, mg, mn
    1. chain a [73538]