Superfamily: HRDC-like

uperfamily

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: SAM domain-like [47768]
   4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
4. Superfamily: HRDC-like [47819]
   uperfamily

Families:

1. HRDC domain from helicases [47820] (3)
   1. HRDC domain from RecQ helicase [47821]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47822] (1)
      2. Escherichia coli [TaxId: 562] [140639] (3)
         SQ P15043 530-606
   2. Werner syndrome ATP-dependent helicase, WRN [140640]
      1. Human (Homo sapiens) [TaxId: 9606] [140641] (3)
         SQ Q14191 1140-1239! SQ Q14191 1142-1235
2. RNA polymerase II subunit RBP4 (RpoF) [69044] (3)
   1. RNA polymerase II subunit RBP4 (RpoF) [69045]
      includes the N-terminal heterodimerisation alpha-hairpin
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [69046] (1)
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [116939] (1)
         SQ P20433 46-221
      3. Human (Homo sapiens) [TaxId: 9606] [140642] (4)
         SQ O15514 14-142
3. RNase D C-terminal domains [140643] (1)
   tandem repeat of two domains of this fold, the first domain belongs to Pfam 00570
   1. Ribonuclease D [140644]
      1. Escherichia coli [TaxId: 562] [140645] (2)
         SQ P09155 194-294! SQ P09155 295-375
4. EXOSC10 HRDC domain-like [140646] (2)
   1. Exosome complex exonuclease RRP6 domain [140647]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140648] (4)
         SQ Q12149 421-516
   2. Exosome component 10, EXOSC10 [140649]
      1. Human (Homo sapiens) [TaxId: 9606] [140650] (1)
         SQ Q01780 483-595

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk