Family: GerE-like (LuxR/UhpA family of transcriptional regulators)

contains additional, fourth helix in the C-terminal extension

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: DNA/RNA-binding 3-helical bundle [46688]
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
4. Superfamily: C-terminal effector domain of the bipartite response regulators [46894]
   binds to DNA and RNA polymerase; the N-terminal, receiver domain belongs to the CheY family
   uperfamily
5. Family: GerE-like (LuxR/UhpA family of transcriptional regulators) [46900]
   contains additional, fourth helix in the C-terminal extension

Protein Domains:

1. Germination protein GerE [63488]
   single-domain protein homologous to the C-terminal domain of NarL
   1. Bacillus subtilis [TaxId: 1423] [63489] (1)
      1. 1fse
         complexed with gol, sul
         1. chain a [60000]
         2. chain b [60001]
         3. chain c [60002]
         4. chain d [60003]
         5. chain e [60004]
         6. chain f [60005]
2. Quorum-sensing transcription factor TraR, C-terminal domain [74690]
   1. Agrobacterium tumefaciens [TaxId: 358] [74691] (2)
      1. 1l3l
         complexed with lae, mse
         1. region a:170-234 [73541]
         2. region b:170-234 [73543]
         3. region c:172-234 [73545]
         4. region d:172-234 [73547]
      2. 1h0m
         complexed with hsl, mse, ooa
         1. region a:170-234 [76442]
         2. region b:170-234 [76444]
         3. region c:171-234 [76446]
         4. region d:170-234 [76448]
3. Nitrate/nitrite response regulator (NarL) [46901]
   1. Escherichia coli [TaxId: 562] [46902] (11)
      1. 1a04
         1. region a:150-216 [16234]
         2. region b:150-216 [16235]
      2. 1je8
         C-domain only
         complexed with mse, so4
         1. chain a [77108]
         2. chain b [77109]
         3. chain e [77110]
         4. chain f [77111]
      3. 1rnl
         complexed with gol, pt
         1. region a:155-216 [16236]
      4. 1zg5
         automatically matched to d1a04a1
         complexed with so4
         1. region a:151-216 [125010]
      5. 1zg5
         automatically matched to d1a04a1
         complexed with so4
         1. region b:151-216 [125011]
      6. 1zg5
         automatically matched to d1a04a1
         complexed with so4
         1. region e:151-216 [125012]
      7. 1zg5
         automatically matched to d1a04a1
         complexed with so4
         1. region f:151-216 [125013]
      8. 1zg1
         automatically matched to d1a04a1
         complexed with so4
         1. region a:151-216 [125005]
      9. 1zg1
         automatically matched to d1a04a1
         complexed with so4
         1. region b:151-216 [125006]
      10. 1zg1
          automatically matched to d1a04a1
          complexed with so4
          1. region e:151-216 [125007]
      11. 1zg1
          automatically matched to d1a04a1
          complexed with so4
          1. region f:151-216 [125008]
4. Transcriptional regulator RcsB [88990]
   1. Erwinia amylovora [TaxId: 552] [88991] (1)
      1. 1p4w
         DNA-binding domain only
         1. chain a [87783]
5. Response regulatory protein StyR, C-terminal domain [140317]
   1. Pseudomonas fluorescens [TaxId: 294] [140318] (2)
      SQ O30989 131-200
      1. 1yio
         complexed with hg, mg
         1. region a:131-200 [123326]
      2. 1zn2
         automatically matched to 1YIO A:131-200
         complexed with mg
         1. region a:131-200 [125371]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk