Structural Classification of Proteins
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Family: Helicase DNA-binding domain

follows the extended AAA-ATPase domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: "Winged helix" DNA-binding domain [46785]
    contains a small beta-sheet (wing)
    link to SUPERFAMILY database - Superfamily
  5. Family: Helicase DNA-binding domain [46819]
    follows the extended AAA-ATPase domain

Protein Domains:

  1. Holliday junction helicase RuvB [46820]
    1. Thermus thermophilus [TaxId: 274] [46821] (3)
      1. 1ixs picpicxrefxref
        complexed with anp
        1. region b:243-318 [76933] picpiclink
      2. 1hqc picpicxref
        complexed with ade, mg
        1. region a:243-318 [16127] picpiclink
        2. region b:243-318 [16128] picpiclink
      3. 1ixr picpicxrefxrefxrefxref
        complexed with anp; mutant
        1. region c:243-312 [76930] picpiclink
    2. Thermotoga maritima [TaxId: 2336] [63474] (6)
      1. 1in4 picpicxref
        complexed with act, adp, co, hez
        1. region a:255-329 [62597] picpiclink
      2. 1j7k picpicxref
        complexed with act, atp, co, hez; mutant
        1. region a:255-329 [62695] picpiclink
      3. 1in6 picpicxref
        complexed with act, adp, co; mutant
        1. region a:255-329 [62601] picpiclink
      4. 1in7 picpicxref
        complexed with act, adp; mutant
        1. region a:255-329 [62603] picpiclink
      5. 1in8 picpicxref
        complexed with adp; mutant
        1. region a:255-329 [62605] picpiclink
      6. 1in5 picpicxref
        complexed with adp; mutant
        1. region a:255-329 [62599] picpiclink
  2. CDC6, C-terminal domain [46822]
    contains the N- and C-terminal helical extensions to the common fold
    1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [46823] (1)
      1. 1fnn picpicxref
        complexed with adp, mg
        1. region a:277-388 [16129] picpiclink
        2. region b:277-388 [16130] picpiclink
  3. CDC6-like protein APE0152, C-terminal domain [116788]
    1. Aeropyrum pernix [TaxId: 56636] [116789] (2)
      SQ Q9YFU8
      1. 1w5s picpicxref
        complexed with adp, so4
        1. region a:300-409 [114251] picpiclink
        2. region b:300-409 [114253] picpiclink
      2. 1w5t picpicxref
        complexed with adp, anp, mg
        1. region a:300-409 [114255] picpiclink
        2. region b:300-409 [114257] picpiclink
        3. region c:300-409 [114259] picpiclink
  4. Hypothetical protein SSO1545, C-terminal domain [140261]
    1. Sulfolobus solfataricus [TaxId: 2287] [140262] (2)
      SQ Q97Y08 284-356
      1. 2fna picpicxrefxref
        complexed with adp, edo, mg
        1. region a:284-356 [133809] picpiclink
      2. 2fna picpicxrefxref
        automatically matched to 2FNA A:284-356
        complexed with adp, edo, mg
        1. region b:284-356 [133811] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk