Structural Classification of Proteins
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Superfamily: lambda repressor-like DNA-binding domains

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: lambda repressor-like DNA-binding domains [47412]
    core: 4 helices; folded leaf, closed
  4. Superfamily: lambda repressor-like DNA-binding domains [47413]
    link to SUPERFAMILY database - Superfamily

Families:

  1. POU-specific domain [47414] (3)
    1. Oct-1 [47415]
      canonical 4-helical fold
      1. Human (Homo sapiens) [TaxId: 9606] [47416] (7)
        1. 1e3o picpicxref
          mutant
          1. region c:1-75 [59198] picpiclink
        2. 1gt0 picpicxrefxref
          mutant
          1. region c:3-77 [76336] picpiclink
        3. 1hf0 picpicxref
          mutant
          1. region a:6-75 [65821] picpiclink
          2. region b:6-75 [65823] picpiclink
        4. 1oct picpicxref
          protein/DNA complex
          1. region c:5-75 [17017] picpiclink
        5. 1o4x picpicxrefxref
          mutant
          1. region a:5-79 [92471] picpiclink
        6. 1cqt picpicxref
          1. region a:2-75 [17018] picpiclink
          2. region b:505-575 [17019] picpiclink
        7. 1pou picpic
          1. chain a [17020] picpiclink
    2. Pit-1 [47417]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [47418] (1)
        1. 1au7 picpicxref
          protein/DNA complex; mutant
          1. region a:5-76 [17021] picpiclink
          2. region b:5-74 [17022] picpiclink
    3. Hepatocyte nuclear factor 1a (LFB1/HNF1) [81748]
      atypical POU domain with extra N-terminal helix
      1. Human (Homo sapiens) [TaxId: 9606] [81749] (1)
        1. 1ic8 picpicxref
          1. region a:87-180 [76741] picpiclink
          2. region b:85-179 [76743] picpiclink
  2. Phage repressors [47419] (7)
    consists of different sequence families of HTH repressors of phage origins
    1. lambda C1 repressor, DNA-binding domain [47420]
      1. Bacteriophage lambda [TaxId: 10710] [47421] (6)
        1. 1lmb picpic
          protein/DNA complex
          1. chain 3 [17023] picpiclink
          2. chain 4 [17024] picpiclink
        2. 1lli picpic
          protein/DNA complex; mutant
          1. chain a [17025] picpiclink
          2. chain b [17026] picpiclink
        3. 1rio picpicxref
          complexed with ca, mpd
          1. chain a [97513] picpiclink
          2. chain b [97514] picpiclink
        4. 1lrp picpic
          CA-atoms only
          1. chain a [17027] picpiclink
        5. 1lrp picpic
          duplicate of 1LRP
          1. chain b [118551] picpiclink
        6. 1lrp picpic
          duplicate of 1LRP
          1. chain c [118552] picpiclink
    2. 434 C1 repressor, DNA-binding domain [47422]
      1. Bacteriophage 434 [TaxId: 10712] [47423] (8)
        SQ P16117 10-62; contains a short additional helix at C-terminus
        1. 1r69 picpic
          1. chain a [17028] picpiclink
        2. 1per picpic
          protein/DNA complex
          1. chain l [17029] picpiclink
          2. chain r [17030] picpiclink
        3. 2or1 picpic
          protein/DNA complex
          1. chain l [17031] picpiclink
          2. chain r [17032] picpiclink
        4. 1rpe picpic
          protein/DNA complex
          1. chain l [17033] picpiclink
          2. chain r [17034] picpiclink
        5. 1r63 picpic
          1. chain a [17035] picpiclink
        6. 1pra picpic
          1. chain a [17037] picpiclink
        7. 2r63 picpic
          mutant
          1. chain a [17036] picpiclink
        8. 1sq8 picpic
          design mutant devoid of hydroxyl groups
          1. chain a [105888] picpiclink
    3. cro 434 [47424]
      1. Bacteriophage 434 [TaxId: 10712] [47425] (3)
        contains a short additional helix at C-terminus
        1. 2cro picpic
          1. chain a [17038] picpiclink
        2. 3cro picpic
          protein/DNA complex
          1. chain l [17039] picpiclink
          2. chain r [17040] picpiclink
        3. 1zug picpic
          1. chain a [17041] picpiclink
    4. P22 C2 repressor, DNA-binding domain [47426]
      1. Salmonella bacteriophage P22 [TaxId: 10754] [47427] (3)
        contains a short additional helix at C-terminus
        1. 2r1j picpic
          automatically matched to d1adra_
          1. region l:3-68 [151525] picpiclink
        2. 2r1j picpic
          automatically matched to d1adra_
          1. region r:3-68 [151526] picpiclink
        3. 1adr picpic
          1. chain a [17042] picpiclink
    5. cro lambda repressor [47428]
      the fourth helix is replaced with a beta hairpin
      3 helices; folded leaf, opened
      1. Bacteriophage lambda [TaxId: 10710] [47429] (9)
        1. 1d1l picpic
          complexed with so4; mutant
          1. chain a [17057] picpiclink
        2. 5cro picpic
          complexed with po4
          1. chain o [17043] picpiclink
          2. chain a [17044] picpiclink
          3. chain b [17045] picpiclink
          4. chain c [17046] picpiclink
        3. 6cro picpic
          protein/DNA complex; complexed with so4
          1. chain a [17047] picpiclink
        4. 3orc picpic
          engineered cro monomer bound nonspecifically to DNA
          protein/DNA complex; mutant
          1. chain a [17061] picpiclink
        5. 4cro picpic
          CA-atoms only
          protein/DNA complex
          1. chain a [17048] picpiclink
          2. chain b [17049] picpiclink
          3. chain c [17050] picpiclink
          4. chain d [17051] picpiclink
          5. chain e [17052] picpiclink
          6. chain f [17053] picpiclink
        6. 1cop picpic
          1. chain d [17058] picpiclink
          2. chain e [17059] picpiclink
        7. 1orc picpic
          monomeric insertion mutant
          1. chain a [17054] picpiclink
        8. 1d1m picpic
          insertion mutant k56-[dgevk]-f58w
          1. chain b [17055] picpiclink
          2. chain a [17056] picpiclink
        9. 2orc picpic
          insertion mutant k56-[dgevk]
          1. chain a [17060] picpiclink
    6. Ner [47430]
      1. Bacteriophage mu [TaxId: 10677] [47431] (2)
        1. 1ner picpic
          1. chain a [17062] picpiclink
        2. 1neq picpic
          1. chain a [17063] picpiclink
    7. cro p22 [109809]
      1. Bacteriophage p22 [TaxId: 10754] [109810] (1)
        SQ P09964
        1. 1rzs picpic
          1. chain a [105139] picpiclink
  3. SinR domain-like [47432] (8)
    1. SinR repressor, DNA-binding domain [47433]
      1. Bacillus subtilis [TaxId: 1423] [47434] (1)
        1. 1b0n picpicxrefxref
          CASP3
          complexed with zn
          1. region a:1-68 [17064] picpiclink
    2. Putative transcription regulator CylR2 [109811]
      1. Enterococcus faecalis [TaxId: 1351] [109812] (3)
        SQ Q8VL32
        1. 1utx picpic
          complexed with iod, na
          1. chain a [108034] picpiclink
          2. chain b [108035] picpiclink
        2. 2gzu picpic
          automatically matched to d1utxa_
          1. region a:1-66 [135915] picpiclink
        3. 2gzu picpic
          automatically matched to d1utxa_
          1. region b:67-132 [135916] picpiclink
    3. Regulatory protein C.BclI [140512]
      1. Bacillus caldolyticus [TaxId: 1394] [140513] (4)
        1. 2b5a picpic
          complexed with acy
          1. region a:1-77 [127882] picpiclink
        2. 2b5a picpic
          automatically matched to 2B5A A:1-77
          complexed with acy
          1. region b:1-75 [127883] picpiclink
        3. 2b5a picpic
          automatically matched to 2B5A A:1-77
          complexed with acy
          1. region c:1-77 [127884] picpiclink
        4. 2b5a picpic
          automatically matched to 2B5A A:1-77
          complexed with acy
          1. region d:1-76 [127885] picpiclink
    4. Restriction-modification controller protein C.AhdI [140514]
      1. Aeromonas hydrophila [TaxId: 644] [140515] (2)
        SQ Q7X0F0 5-73
        1. 1y7y picpic
          1. region a:5-73 [122729] picpiclink
        2. 1y7y picpic
          automatically matched to 1Y7Y A:5-73
          1. region b:8-73 [122730] picpiclink
    5. Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain [140516]
      1. Streptomyces wedmorensis [TaxId: 43759] [140517] (20)
        SQ Q56185 6-76
        1. 2bnm picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with so4, zn
          1. region a:6-76 [128835] picpiclink
        2. 2bnm picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with so4, zn
          1. region b:6-76 [128837] picpiclink
        3. 2bno picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with hg, so4, zn
          1. region a:6-76 [128843] picpiclink
        4. 2bno picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with hg, so4, zn
          1. region b:6-76 [128845] picpiclink
        5. 1zzc picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with co, trs
          1. region a:6-76 [125896] picpiclink
        6. 1zzc picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with co, trs
          1. region b:6-76 [125898] picpiclink
        7. 1zz7 picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, s0h
          1. region a:7-76 [125876] picpiclink
        8. 1zz7 picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, s0h
          1. region b:7-76 [125878] picpiclink
        9. 1zz6 picpicxrefxref
          1. region a:6-76 [125872] picpiclink
        10. 1zz6 picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          1. region b:6-76 [125874] picpiclink
        11. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, s0h
          1. region a:7-76 [125880] picpiclink
        12. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, s0h
          1. region b:6-76 [125882] picpiclink
        13. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, s0h
          1. region c:6-76 [125884] picpiclink
        14. 2bnn picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fcn, zn
          1. region a:6-76 [128839] picpiclink
        15. 2bnn picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fcn, zn
          1. region b:6-76 [128841] picpiclink
        16. 1zzb picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with co, s0h
          1. region a:6-76 [125892] picpiclink
        17. 1zzb picpicxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with co, s0h
          1. region b:6-76 [125894] picpiclink
        18. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, so4
          1. region a:6-76 [125886] picpiclink
        19. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, so4
          1. region b:6-76 [125888] picpiclink
        20. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:6-76
          complexed with fe2, so4
          1. region c:6-76 [125890] picpiclink
    6. Putative transcriptional regulator RHA1_ro04071 [158461]
      1. Rhodococcus sp. RHA1 [TaxId: 101510] [158462] (2)
        SQ Q0S9B8 3-84
        1. 2ofy picpic
          1. region a:3-84 [148762] picpiclink
        2. 2ofy picpic
          automatically matched to 2OFY A:3-84
          1. region b:5-84 [148763] picpiclink
    7. Uncharacterized protein Atu1735 [158463]
      1. Agrobacterium tumefaciens [TaxId: 358] [158464] (1)
        SQ Q8UEM2 30-91
        1. 2ppx picpic
          complexed with gol, so4
          1. region a:30-91 [149783] picpiclink
    8. Antitoxin HigA [158465]
      Uncharacterized transcriptional regulator YddM
      1. Escherichia coli [TaxId: 562] [158466] (2)
        SQ P67699 8-94
        1. 2ict picpic
          automatically matched to 2ICP A:8-94
          1. region a:8-94 [147605] picpiclink
        2. 2icp picpic
          complexed with mg
          1. region a:8-94 [147604] picpiclink
  4. Cyanase N-terminal domain [47435] (1)
    probably does not bind to DNA
    1. Cyanase N-terminal domain [47436]
      1. Escherichia coli [TaxId: 562] [47437] (22)
        1. 1dwk picpicxref
          complexed with oxl, so4
          1. region a:1-86 [17075] picpiclink
          2. region b:1-86 [17076] picpiclink
          3. region c:1-86 [17077] picpiclink
          4. region d:1-86 [17078] picpiclink
          5. region e:1-86 [17079] picpiclink
          6. region f:1-86 [17080] picpiclink
          7. region g:1-86 [17081] picpiclink
          8. region h:1-86 [17082] picpiclink
          9. region i:1-86 [17083] picpiclink
          10. region j:1-86 [17084] picpiclink
        2. 1dw9 picpicxref
          CASP3
          complexed with cl, so4
          1. region a:1-86 [17065] picpiclink
          2. region b:1-86 [17066] picpiclink
          3. region c:1-86 [17067] picpiclink
          4. region d:1-86 [17068] picpiclink
          5. region e:1-86 [17069] picpiclink
          6. region f:1-86 [17070] picpiclink
          7. region g:1-86 [17071] picpiclink
          8. region h:1-86 [17072] picpiclink
          9. region i:1-86 [17073] picpiclink
          10. region j:1-86 [17074] picpiclink
        3. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region a:1-86 [137649] picpiclink
        4. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region b:1-86 [137651] picpiclink
        5. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region c:1-86 [137653] picpiclink
        6. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region d:1-86 [137655] picpiclink
        7. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region e:1-86 [137657] picpiclink
        8. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region f:1-86 [137659] picpiclink
        9. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region g:1-86 [137661] picpiclink
        10. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region h:1-86 [137663] picpiclink
        11. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region i:1-86 [137665] picpiclink
        12. 2iu7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with oxl, so4; mutant
          1. region j:1-86 [137667] picpiclink
        13. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region a:1-86 [137689] picpiclink
        14. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region b:1-86 [137691] picpiclink
        15. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region c:1-86 [137693] picpiclink
        16. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region d:1-86 [137695] picpiclink
        17. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region e:1-86 [137697] picpiclink
        18. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region f:1-86 [137699] picpiclink
        19. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region g:1-86 [137701] picpiclink
        20. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region h:1-86 [137703] picpiclink
        21. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region i:1-86 [137705] picpiclink
        22. 2iuo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dw9a1
          complexed with azi, br, cl, so4; mutant
          1. region j:1-86 [137707] picpiclink
  5. GalR/LacI-like bacterial regulator [47438] (4)
    lacks the first helix of canonical fold
    3 helices; bundle, partly opened, right-handed twist
    1. Purine repressor (PurR), N-terminal domain [47439]
      1. Escherichia coli [TaxId: 562] [47440] (24)
        1. 1qpz picpicxref
          protein/DNA complex; complexed with hpa
          1. region a:2-58 [17097] picpiclink
        2. 1jft picpicxref
          complexed with hpa, po4; mutant
          1. region a:2-58 [66652] picpiclink
        3. 2pub picpicxref
          protein/DNA complex; complexed with ad2; mutant
          1. region a:3-58 [17086] picpiclink
        4. 2puc picpicxref
          protein/DNA complex; complexed with gun; mutant
          1. region a:3-58 [17094] picpiclink
        5. 1qqb picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17099] picpiclink
        6. 1vpw picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17087] picpiclink
        7. 1bdh picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17089] picpiclink
        8. 2pud picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17085] picpiclink
        9. 1zay picpicxref
          1. region a:3-58 [17090] picpiclink
        10. 2pug picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17088] picpiclink
        11. 2pue picpicxref
          protein/DNA complex; complexed with ad2; mutant
          1. region a:3-58 [17091] picpiclink
        12. 1wet picpicxref
          protein/DNA complex; complexed with gun
          1. region a:3-58 [17093] picpiclink
        13. 1jh9 picpicxref
          complexed with hpa, po4; mutant
          1. region a:2-58 [66710] picpiclink
        14. 1jfs picpicxref
          complexed with hpa; mutant
          1. region a:2-58 [66650] picpiclink
        15. 1bdi picpicxref
          protein/DNA complex; complexed with hpa
          1. region a:3-58 [17092] picpiclink
        16. 1pnr picpicxref
          protein/DNA complex; complexed with hpa
          1. region a:3-58 [17095] picpiclink
        17. 1qqa picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17101] picpiclink
        18. 1qp4 picpicxref
          protein/DNA complex; complexed with hpa
          1. region a:3-58 [17096] picpiclink
        19. 2pua picpicxref
          protein/DNA complex; complexed with 6mp; mutant
          1. region a:2-58 [17098] picpiclink
        20. 1qp7 picpicxref
          protein/DNA complex; complexed with hpa; mutant
          1. region a:3-58 [17103] picpiclink
        21. 1qp0 picpicxref
          protein/DNA complex; complexed with hpa
          1. region a:3-58 [17102] picpiclink
        22. 2puf picpicxref
          protein/DNA complex; complexed with gun; mutant
          1. region a:3-58 [17100] picpiclink
        23. 1pru picpic
          1. chain a [17104] picpiclink
        24. 1prv picpic
          1. chain a [17105] picpiclink
    2. Lac repressor (LacR), N-terminal domain [47441]
      1. Escherichia coli [TaxId: 562] [47442] (14)
        1. 1efa picpicxref
          protein/DNA complex; complexed with npf; mutant
          1. region a:2-60 [17106] picpiclink
          2. region b:2-60 [17107] picpiclink
          3. region c:46-60 [17108] picpiclink
        2. 1jwl picpicxrefxref
          complexed with npf; mutant
          1. region a:2-60 [67389] picpiclink
          2. region b:2-60 [67391] picpiclink
        3. 2pe5 picpicxrefxrefxref
          automatically matched to d1cjga_
          complexed with 145; mutant
          1. region a:2-61 [149392] picpiclink
        4. 2pe5 picpicxrefxrefxref
          automatically matched to d1cjga_
          complexed with 145; mutant
          1. region b:2-61 [149394] picpiclink
        5. 2pe5 picpicxrefxrefxref
          automatically matched to d1cjga_
          complexed with 145; mutant
          1. region c:2-61 [149396] picpiclink
        6. 1cjg picpic
          1. chain a [17112] picpiclink
          2. chain b [17113] picpiclink
        7. 1lcd picpic
          protein/DNA complex; complexed with na
          1. chain a [17111] picpiclink
        8. 1l1m picpic
          mutant
          1. chain a [73474] picpiclink
          2. chain b [73475] picpiclink
        9. 1lqc picpic
          1. chain a [17109] picpiclink
        10. 1lcc picpic
          protein/DNA complex; complexed with na
          1. chain a [17110] picpiclink
        11. 1osl picpic
          mutant
          1. chain a [93497] picpiclink
          2. chain b [93498] picpiclink
        12. 2bjc picpic
          mutant
          1. region a:1-62 [128620] picpiclink
        13. 2bjc picpic
          automatically matched to 2BJC A:1-62
          mutant
          1. region b:101-162 [128621] picpiclink
        14. 1lbg picpicxref
          protein/DNA complex
          1. region a:1-60 [17114] picpiclink
          2. region b:1-60 [17115] picpiclink
          3. region c:1-60 [17116] picpiclink
          4. region d:1-60 [17117] picpiclink
    3. Fructose repressor (FruR), N-terminal domain [47443]
      1. Escherichia coli [TaxId: 562] [47444] (2)
        1. 1uxd picpic
          1. chain a [17118] picpiclink
        2. 1uxc picpic
          mutant
          1. chain a [17119] picpiclink
    4. Glucose-resistance amylase regulator CcpA, N-terminal domain [116889]
      1. Bacillus megaterium [TaxId: 1404] [116890] (5)
        SQ P46828
        1. 2hsg picpicxref
          automatically matched to d1rzra1
          1. region a:2-58 [136722] picpiclink
        2. 1rzr picpicxrefxref
          complexed with mg, so4
          1. region a:1-60 [111989] picpiclink
          2. region c:1-60 [111991] picpiclink
          3. region d:1-60 [111993] picpiclink
          4. region g:1-60 [111995] picpiclink
        3. 1zvv picpicxrefxrefxrefxrefxrefxref
          complexed with iod; mutant
          1. region a:1-59 [125727] picpiclink
        4. 1zvv picpicxrefxrefxrefxrefxrefxref
          automatically matched to 1ZVV A:1-59
          complexed with iod; mutant
          1. region b:1-59 [125729] picpiclink
        5. 1zvv picpicxrefxrefxrefxrefxrefxref
          automatically matched to 1ZVV A:1-59
          complexed with iod; mutant
          1. region g:1-59 [125731] picpiclink
  6. YdiL-like [109813] (2)
    contains extra C-terminal all-alpha dimerization subdomain; the dimer may bind DNA
    1. Putative cytoplasmic protein YdiL [109814]
      1. Salmonella typhimurium [TaxId: 90371] [109815] (1)
        SQ Q8ZPR1
        1. 1s4k picpic
          Structural genomics target
          1. chain a [105254] picpiclink
          2. chain b [105255] picpiclink
    2. Hypothetical protein SO3848 [158467]
      1. Shewanella oneidensis [TaxId: 70863] [158468] (1)
        SQ Q8EAP9 5-166
        1. 2ox6 picpic
          complexed with mg
          1. region a:5-166 [149053] picpiclink
  7. CUT domain [116891] (4)
    Pfam 02376
    1. Homeobox protein Cux-2, CUTL2 [116892]
      1. Human (Homo sapiens) [TaxId: 9606] [116893] (3)
        SQ O14529 825-912; 966-1063
        1. 1wh8 picpic
          Structural genomics target; 3rd CUT domain
          1. chain a [114636] picpiclink
        2. 1x2l picpic
          1st CUT domain
          1. region a:9-95 [121644] picpiclink
        3. 1wh6 picpic
          Structural genomics target; 2nd CUT domain
          1. chain a [114634] picpiclink
    2. DNA-binding protein SATB2 [116894]
      1. Human (Homo sapiens) [TaxId: 9606] [116895] (2)
        SQ Q9UPW6 350-437; the structure of a homedomain (615-672) is also known: 1WI3
        1. 2csf picpic
          2nd CUT domain
          1. region a:8-95 [130767] picpiclink
        2. 1wiz picpic
          Structural genomics target
          1. chain a [114686] picpiclink
    3. Hepatocyte nuclear factor 6 [116896]
      1. Mouse (Mus musculus) [TaxId: 10090] [116897] (1)
        SQ O08755 291-437
        1. 1s7e picpicxref
          1. region a:6-85 [112045] picpiclink
    4. DNA-binding protein SATB1 [140518]
      1. Human (Homo sapiens) [TaxId: 9606] [140519] (3)
        SQ Q01826 368-455
        1. 2o4a picpic
          automatically matched to d1ysea1
          1. region a:370-452 [148582] picpiclink
        2. 2o49 picpic
          automatically matched to d1ysea1
          1. region a:370-452 [148581] picpiclink
        3. 1yse picpic
          1st CUT domain
          1. region a:368-455 [123970] picpiclink
  8. Probable transcriptional regulator VC1968, N-terminal domain [116898] (1)
    1. Probable transcriptional regulator VC1968, N-terminal domain [116899]
      1. Vibrio cholerae [TaxId: 666] [116900] (1)
        SQ Q9KQN0
        1. 1y9q picpicxref
          structural genomics target
          complexed with med, zn
          1. region a:4-82 [116592] picpiclink
  9. Bacteriophage CII protein [140520] (1)
    Pfam 05269; a compact helix-swapped dimer of the canonical fold; includes the extra C-terminal teramerisation region (alpha-helix); in the tetramer-DNA complex only two of the four HTH motifs interact with DNA
    1. Regulatory protein cII [140521]
      1. Bacteriophage lambda [TaxId: 10710] [140522] (12)
        SQ P03042 2-80! SQ P03042 4-81
        1. 1zs4 picpic
          1. region a:4-81 [125585] picpiclink
        2. 1zs4 picpic
          automatically matched to 1ZS4 A:4-81
          1. region b:4-81 [125586] picpiclink
        3. 1zs4 picpic
          automatically matched to 1ZS4 A:4-81
          1. region c:4-81 [125587] picpiclink
        4. 1zs4 picpic
          automatically matched to 1ZS4 A:4-81
          1. region d:7-79 [125588] picpiclink
        5. 1xwr picpic
          complexed with ipa
          1. region a:2-80 [122406] picpiclink
        6. 1xwr picpic
          automatically matched to 1XWR A:2-80
          complexed with ipa
          1. region b:4-80 [122407] picpiclink
        7. 1xwr picpic
          automatically matched to 1XWR A:2-80
          complexed with ipa
          1. region c:4-79 [122408] picpiclink
        8. 1xwr picpic
          automatically matched to 1XWR A:2-80
          complexed with ipa
          1. region d:4-80 [122409] picpiclink
        9. 1zpq picpic
          automatically matched to 1XWR A:2-80
          1. region a:6-79 [125469] picpiclink
        10. 1zpq picpic
          automatically matched to 1XWR A:2-80
          1. region b:7-80 [125470] picpiclink
        11. 1zpq picpic
          automatically matched to 1XWR A:2-80
          1. region c:3-80 [125471] picpiclink
        12. 1zpq picpic
          automatically matched to 1XWR A:2-80
          1. region d:4-80 [125472] picpiclink
  10. NE0471 C-terminal domain-like [140523] (1)
    1. Hypothetical protein NE0471 C-terminal domain [140524]
      1. Nitrosomonas europaea [TaxId: 915] [140525] (2)
        SQ Q82X29 88-154
        1. 2auw picpicxrefxref
          complexed with fmt, gol
          1. region a:88-154 [127339] picpiclink
        2. 2auw picpicxrefxref
          automatically matched to 2AUW A:88-154
          complexed with fmt, gol
          1. region b:88-154 [127341] picpiclink
  11. PrgX N-terminal domain-like [140526] (1)
    Part of Pfam 01381
    1. PrgX [140527]
      possibly involved in pheromone-inducible conjugation
      1. Enterococcus faecalis [TaxId: 1351] [140528] (40)
        SQ Q04114 1-69! SQ Q04114 2-66
        1. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          mutant
          1. region a:2-66 [127435] picpiclink
        2. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region b:2-66 [127437] picpiclink
        3. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region c:3-66 [127439] picpiclink
        4. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region d:3-66 [127441] picpiclink
        5. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region e:3-66 [127443] picpiclink
        6. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region f:3-66 [127445] picpiclink
        7. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region g:4-66 [127447] picpiclink
        8. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region h:4-66 [127449] picpiclink
        9. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region i:2-66 [127451] picpiclink
        10. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region j:4-66 [127453] picpiclink
        11. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region k:4-66 [127455] picpiclink
        12. 2awi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region l:4-66 [127457] picpiclink
        13. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region a:1-68 [127500] picpiclink
        14. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region b:2-68 [127502] picpiclink
        15. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region c:3-68 [127504] picpiclink
        16. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region d:3-68 [127506] picpiclink
        17. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region e:3-68 [127508] picpiclink
        18. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region f:3-68 [127510] picpiclink
        19. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region g:2-68 [127512] picpiclink
        20. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region h:3-68 [127514] picpiclink
        21. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region i:2-68 [127516] picpiclink
        22. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region j:4-68 [127518] picpiclink
        23. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region k:4-68 [127520] picpiclink
        24. 2axu picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region l:2-68 [127522] picpiclink
        25. 2grl picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region a:1-69 [135560] picpiclink
        26. 2grl picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region b:1-69 [135562] picpiclink
        27. 2grl picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region c:1-69 [135564] picpiclink
        28. 2grl picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region d:1-69 [135566] picpiclink
        29. 2aw6 picpicxrefxref
          1. region a:1-69 [127408] picpiclink
        30. 2aw6 picpicxrefxref
          automatically matched to 2AW6 A:1-69
          1. region b:1-69 [127410] picpiclink
        31. 2axz picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region a:1-69 [127536] picpiclink
        32. 2axz picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region b:1-69 [127538] picpiclink
        33. 2axz picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region c:2-68 [127540] picpiclink
        34. 2axz picpicxrefxrefxrefxref
          automatically matched to 2AW6 A:1-69
          1. region d:1-69 [127542] picpiclink
        35. 2grm picpicxrefxref
          mutant
          1. region a:1-69 [147161] picpiclink
        36. 2grm picpicxrefxref
          automatically matched to 2GRM A:1-69
          mutant
          1. region b:1-69 [147163] picpiclink
        37. 2axv picpicxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region a:2-66 [127524] picpiclink
        38. 2axv picpicxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region b:2-66 [127526] picpiclink
        39. 2axv picpicxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region c:2-66 [127528] picpiclink
        40. 2axv picpicxrefxrefxrefxref
          automatically matched to 2AWI A:2-66
          mutant
          1. region d:2-66 [127530] picpiclink
  12. EDF1-like [140529] (1)
    part of Pfam 01381
    1. Endothelial differentiation-related factor 1, EDF1 [140530]
      1. Human (Homo sapiens) [TaxId: 9606] [140531] (1)
        SQ O60869 71-148
        1. 1x57 picpic
          1. region a:8-85 [121704] picpiclink
  13. NE1354 [140532] (2)
    contains extra C-terminal dimerisation arm (beta-strand)
    1. HTH-motif protein NE1354 [140533]
      1. Nitrosomonas europaea [TaxId: 915] [140534] (2)
        SQ Q82UW4 1-69
        1. 2a6c picpic
          complexed with cit, edo, gol
          1. region a:1-69 [126236] picpiclink
        2. 2a6c picpic
          automatically matched to 2A6C A:1-69
          complexed with cit, edo, gol
          1. region b:1-69 [126237] picpiclink
    2. Hypothetical protein RPA3824 [158469]
      1. Rhodopseudomonas palustris [TaxId: 1076] [158470] (2)
        SQ Q6N370 28-116
        1. 2o38 picpic
          complexed with acy
          1. region a:28-116 [148568] picpiclink
        2. 2o38 picpic
          automatically matched to 2O38 A:28-116
          complexed with acy
          1. region b:28-116 [148569] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk