Structural Classification of Proteins
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Superfamily: Retrovirus capsid dimerization domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Acyl carrier protein-like [47335]
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. Superfamily: Retrovirus capsid dimerization domain-like [47353]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Retrovirus capsid protein C-terminal domain [47354] (4)
    1. EIAV capsid protein p26 [47355]
      1. Equine infectious anemia virus [TaxId: 11665] [47356] (2)
        1. 2eia picpicxref
          1. region a:148-222 [16949] picpiclink
          2. region b:148-220 [16950] picpiclink
        2. 1eia picpicxref
          1. region a:148-222 [16951] picpiclink
    2. HTLV-I capsid protein [47357]
      1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47358] (1)
        1. 1qrj picpicxref
          1. region b:131-214 [16952] picpiclink
    3. HIV capsid protein, dimerisation domain [47359]
      1. Human immunodeficiency virus type 1 [TaxId: 11676] [47360] (7)
        1. 1a8o picpic
          mutant
          1. chain a [16953] picpiclink
        2. 2buo picpic
          automatically matched to d1a43__
          complexed with acy
          1. region a:148-219 [129224] picpiclink
        3. 1baj picpic
          extended at the C-terminus to include a 14-residue GAG p2 domain
          1. chain a [16954] picpiclink
        4. 1e6j picpicxrefxrefxrefxrefxref
          mutant
          1. region p:148-220 [16956] picpiclink
        5. 1a43 picpic
          1. chain a [16955] picpiclink
        6. 1aum picpic
          1. chain a [16957] picpiclink
        7. 3dik picpicxref
          automatically matched to d1e6jp1
          1. region a:148-219 [157751] picpiclink
    4. RSV capsid protein [47361]
      1. Rous sarcoma virus [TaxId: 11886] [47362] (2)
        1. 1d1d picpicxref
          1. region a:151-230 [16958] picpiclink
        2. 1eoq picpic
          C-terminal domain only
          1. chain a [16959] picpiclink
  2. SCAN domain [140466] (2)
    Pfam 02023; forms segment-swapped dimers compared to the retroviral capsid domain
    1. Zinc finger protein 42 [140467]
      1. Human (Homo sapiens) [TaxId: 9606] [140468] (2)
        SQ P28698 37-128
        1. 2fi2 picpic
          1. region a:37-128 [133509] picpiclink
        2. 2fi2 picpic
          automatically matched to 2FI2 A:37-128
          1. region b:37-128 [133510] picpiclink
    2. Zinc finger protein 174 [140469]
      1. Human (Homo sapiens) [TaxId: 9606] [140470] (2)
        SQ Q15697 37-132
        1. 1y7q picpic
          mutant
          1. region a:37-132 [122714] picpiclink
        2. 1y7q picpic
          automatically matched to 1Y7Q A:37-132
          mutant
          1. region b:37-132 [122715] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk