Structural Classification of Proteins
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Superfamily: S15/NS1 RNA-binding domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: S15/NS1 RNA-binding domain [47059]
    3 helices; irregular array
  4. Superfamily: S15/NS1 RNA-binding domain [47060]
    link to SUPERFAMILY database - Superfamily

Families:

  1. N-terminal, RNA-binding domain of nonstructural protein NS1 [47061] (2)
    1. N-terminal, RNA-binding domain of nonstructural protein NS1 [47062]
      1. Influenza A virus [TaxId: 11320] [47063] (2)
        1. 1ail picpic
          1. chain a [16381] picpiclink
        2. 1ns1 picpic
          1. chain a [16382] picpiclink
          2. chain b [16383] picpiclink
      2. Influenza B virus [TaxId: 11520] [140389] (1)
        SQ P03502 15-103
        1. 1xeq picpic
          complexed with br
          1. region a:15-103 [121915] picpiclink
  2. Ribosomal protein S15 [47064] (3)
    contains additional N-terminal helix that forms a separate unit
    1. Ribosomal protein S15 [47065]
      1. Bacillus stearothermophilus [TaxId: 1422] [47066] (1)
        1. 1a32 picpic
          1. chain a [16384] picpiclink
      2. Thermus thermophilus [TaxId: 274] [47067] (42)
        SQ P80378
        1. 1kuq picpic
          complex with an rRNA fragment
          complexed with so4; mutant
          1. chain a [84470] picpiclink
        2. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 6mz, cm0, k, mg, par, zn
          1. region o:2-89 [139946] picpiclink
        3. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, scm, sry, zn
          1. chain o [16388] picpiclink
        4. 1dk1 picpic
          complex with an rRNA fragment
          complexed with k, mg, na; mutant
          1. chain a [16385] picpiclink
        5. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with unx, zn
          1. chain o [71558] picpiclink
        6. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with k, mg, par, zn
          1. region o:2-89 [140018] picpiclink
        7. 1f7y picpic
          complex with an rRNA fragment
          complexed with k, mg, na
          1. chain a [16386] picpiclink
        8. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 6mz, cm0, k, mg, par, zn
          1. region o:2-89 [139966] picpiclink
        9. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 6mz, cm0, k, mg, par, zn
          1. region o:2-89 [139926] picpiclink
        10. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, t6a, zn
          1. chain o [115544] picpiclink
        11. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, psu, zn
          1. chain o [79884] picpiclink
        12. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 6mz, cm0, k, mg, par, zn
          1. region o:2-89 [139906] picpiclink
        13. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, zn
          1. chain o [115640] picpiclink
        14. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, zn
          1. chain o [115618] picpiclink
        15. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. chain o [16389] picpiclink
        16. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with hyg, mg, zn
          1. chain o [16390] picpiclink
        17. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 5mu, mg, par, zn
          1. region o:2-89 [137880] picpiclink
        18. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 5mu, mg, par, zn
          1. region o:2-89 [137853] picpiclink
        19. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, mnu, par, t6a, zn
          1. chain o [115514] picpiclink
        20. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, tac, zn
          1. chain o [16391] picpiclink
        21. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with zn
          1. region o:2-89 [132039] picpiclink
        22. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, wo2, zn
          1. chain o [62006] picpiclink
        23. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, pcy, zn
          1. chain o [16392] picpiclink
        24. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, par, psu, zn
          1. chain o [79906] picpiclink
        25. 2fkx picpic
          automatically matched to d1ab3__
          1. region a:1-88 [133685] picpiclink
        26. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with ksg
          1. region o:2-89 [136491] picpiclink
        27. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, wo2, zn
          1. chain o [62050] picpiclink
        28. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. chain o [79928] picpiclink
        29. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, tac, wo2, zn
          1. chain o [62073] picpiclink
        30. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. chain o [79951] picpiclink
        31. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ede, mg, wo2, zn
          1. chain o [62028] picpiclink
        32. 1ab3 picpic
          1. chain a [16395] picpiclink
        33. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with ab9, d2c, k, mg, zn
          1. region o:2-89 [132952] picpiclink
        34. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          1. region r:2-89 [136434] picpiclink
        35. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          1. region r:2-89 [136413] picpiclink
        36. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          1. region r:2-89 [136455] picpiclink
        37. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
          1. region p:2-89 [139413] picpiclink
        38. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          1. region r:2-89 [123611] picpiclink
        39. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with psu, yyg
          1. region o:2-89 [127947] picpiclink
        40. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with psu, yyg
          1. region o:2-89 [128177] picpiclink
        41. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ab3__
          complexed with psu, yyg
          1. region o:2-89 [128140] picpiclink
        42. 1g1x picpicxrefxref
          1. chain b [16393] picpiclink
          2. chain g [16394] picpiclink
      3. Escherichia coli [TaxId: 562] [158383] (10)
        SQ Q8X9M2 2-89
        1. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with ksg, mg
          1. region o:1-88 [144449] picpiclink
        2. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with hyg, mg
          1. region o:1-88 [157617] picpiclink
        3. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with hyg, mg
          1. region o:1-88 [157671] picpiclink
        4. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with ksg, mg
          1. region o:1-88 [144490] picpiclink
        5. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          Representative structure
          complexed with mg
          1. region o:1-88 [144856] picpiclink
        6. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with mg
          1. region o:1-88 [144899] picpiclink
        7. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with mg
          1. region o:1-88 [145434] picpiclink
        8. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with mg
          1. region o:1-88 [145476] picpiclink
        9. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with mg
          1. region o:1-88 [153137] picpiclink
        10. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2AVY O:1-88
          complexed with mg
          1. region o:1-88 [153159] picpiclink
  3. a tRNA synthase domain [47068] (3)
    1. Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element [47069]
      1. Chinese hamster (Cricetulus griseus) [TaxId: 10029] [47070] (2)
        1. 1d2d picpic
          1. chain a [16397] picpiclink
        2. 1r1b picpic
          1. chain a [16396] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [63499] (1)
        1. 1fyj picpic
          1. chain a [60115] picpiclink
    2. N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) [101103]
      1. Human (Homo sapiens) [TaxId: 9606] [101104] (1)
        1. 1r6t picpicxrefxref
          complexed with gol, tym; mutant
          1. region a:7-60 [97160] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk