Structural Classification of Proteins
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Superfamily: Putative DNA-binding domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Putative DNA-binding domain [46954]
    core: 3 helices; architecture is similar to that of the "winged helix" fold but topology is different
  4. Superfamily: Putative DNA-binding domain [46955]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Domains B1 and B5 of PheRS-beta, PheT [46956] (1)
    duplication: contains two such domains related by pseudo dyad
    1. Domains B1 and B5 of PheRS-beta, PheT [46957]
      1. Thermus thermophilus [TaxId: 274] [46958] (13) picpic
        identical sequence to Thermus aquaticus, TaxId: 271
  2. DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain [46959] (1)
    1. DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain [46960]
      1. Human (Homo sapiens) [TaxId: 9606] [46961] (2) picpic
  3. Dachshund-homology domain [74693] (2)
    Pfam 02437
    1. Retinal determination protein Dachshund [74694]
      1. Human (Homo sapiens) [TaxId: 9606] [74695] (1) picpic
    2. Ski oncogene [109742]
      1. Human (Homo sapiens) [TaxId: 9606] [109743] (1) picpic
        SQ P12755 91-192
  4. DNA-binding N-terminal domain of transcription activators [46962] (4)
    includes a dimerisation, antiparallel coiled-coil subdomain
    1. Transcription activator BmrR [46963]
      followed by long alpha-helical linker
      1. Bacillus subtilis [TaxId: 1423] [46964] (7) picpic
        SQ P39075
    2. Multidrug transporter activator MtaN [68976]
      1. Bacillus subtilis [TaxId: 1423] [68977] (2) picpic
        SQ P71039 1-109
    3. Transcriptional regulator CueR [101073]
      copper efflux regulator
      1. Escherichia coli [TaxId: 562] [101074] (3) picpic
    4. Transcriptional regulator ZntR [101075]
      Zn(II)-responsive regulator of ZntA
      1. Escherichia coli [TaxId: 562] [101076] (3) picpic
  5. Terminase gpNU1 subunit domain [74696] (1)
    1. Terminase gpNU1 subunit domain [74697]
      1. Bacteriophage lambda [TaxId: 10710] [74698] (1) picpic
  6. Excisionase-like [46891] (2)
    kinked C-terminal helix
    1. mu transposase, DNA-binding domain [46892]
      1. Bacteriophage mu [TaxId: 10677] [46893] (4) picpic
    2. Excisionase Xis [89004]
      1. Bacteriophage lambda [TaxId: 10710] [89005] (8) picpic
        SQ P03699 1-55
  7. N-terminal subdomain of bacterial translation initiation factor IF2 [89006] (1)
    1. N-terminal subdomain of bacterial translation initiation factor IF2 [89007]
      1. Escherichia coli [TaxId: 562] [89008] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk