Structural Classification of Proteins

Superfamily: Rubredoxin-like

: uperfamily

Lineage:

Root: scop
Class: Small proteins [56992]
Usually dominated by metal ligand, heme, and/or disulfide bridges
Fold: Rubredoxin-like [57769]
metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
Superfamily: Rubredoxin-like [57802]
uperfamily

Families:

Rubredoxin [57803] (10)
1. Rubredoxin [57804]
  1. Desulfovibrio vulgaris [TaxId: 881] [57805] (7)
    1. 1rb9
      complexed with fe2, for, so4
      1. chain a [45214]
    2. 8rxn
      complexed with fe, so4
      1. chain a [45215]
    3. 7rxn
      complexed with fe, so4
      1. chain a [45216]
    4. 2rdv
      complexed with fe
      1. chain a [45217]
      2. chain b [45218]
      3. chain c [45219]
    5. 1rdv
      complexed with fe
      1. chain a [45220]
    6. 2ql0
      automatically matched to d1rb9a_
      complexed with zn
      1. region a:1-52 [150858]
    7. 2qkz
      automatically matched to d1rb9a_
      complexed with ni
      1. region a:1-52 [150857]
  2. Desulfovibrio gigas [TaxId: 879] [57806] (3)
    1. 2dsx
      automatically matched to d1e8ja_
      complexed with fe
      1. region a:1-52 [131699]
    2. 1rdg
      complexed with fe
      1. chain a [45221]
    3. 1e8j
      1. chain a [64796]
  3. Desulfovibrio desulfuricans, strain 27774 [TaxId: 876] [57807] (1)
    1. 6rxn
      complexed with fe
      1. chain a [45222]
  4. Clostridium pasteurianum [TaxId: 1501] [57808] (23)
    SQ P00268
    1. 1iro
      complexed with fe
      1. chain a [45223]
    2. 1irn
      complexed with zn
      1. chain a [45224]
    3. 4rxn
      complexed with fe
      1. chain a [45226]
    4. 1smm
      complexed with fe, so4; mutant
      1. chain a [98923]
    5. 5rxn
      complexed with fe
      1. chain a [45225]
    6. 1r0i
      cadmium-substituted
      complexed with cd
      1. chain a [96728]
    7. 1smw
      complexed with fe2; mutant
      1. chain a [98925]
    8. 1b13
      complexed with fe; mutant
      1. chain a [45227]
    9. 1c09
      complexed with fe; mutant
      1. chain a [45228]
      2. chain b [45229]
      3. chain c [45230]
    10. 1r0f
      gallium-substituted
      complexed with ga
      1. chain a [96725]
    11. 1r0g
      mercury-substituted
      complexed with hg
      1. chain a [96726]
    12. 1smu
      complexed with fe2; mutant
      1. chain a [98924]
    13. 1t9p
      complexed with fe; mutant
      1. chain a [112369]
      2. chain b [112370]
      3. chain c [112371]
    14. 1fhh
      complexed with fe
      1. chain a [59836]
    15. 1r0h
      cobalt-substituted
      complexed with co
      1. chain a [96727]
    16. 1b2j
      complexed with fe; mutant
      1. chain a [45231]
    17. 1fhm
      complexed with fe2
      1. chain a [59841]
    18. 1be7
      complexed with fe; mutant
      1. chain a [45232]
    19. 1b2o
      complexed with fe; mutant
      1. chain a [45233]
      2. chain b [45234]
    20. 1t9o
      complexed with fe; mutant
      1. chain a [112366]
      2. chain b [112367]
      3. chain c [112368]
    21. 1t9q
      complexed with fe; mutant
      1. chain a [112372]
    22. 1r0j
      nickel-substituted
      complexed with ni
      1. chain a [96729]
    23. 1bfy
      complexed with fe
      1. chain a [45235]
  5. Archaeon Pyrococcus furiosus [TaxId: 2261] [57809] (11)
    SQ P24297
    1. 1brf
      complexed with fe
      1. chain a [45236]
    2. 1bq8
      complexed with fe; mutant
      1. chain a [45237]
    3. 1bq9
      complexed with fe; mutant
      1. chain a [45238]
    4. 1iu5
      complexed with fe; mutant
      1. chain a [71434]
    5. 1vcx
      complexed with fe
      1. chain a [108516]
    6. 1iu6
      complexed with fe; mutant
      1. chain a [71435]
    7. 1caa
      complexed with fe
      1. chain a [45239]
    8. 1cad
      complexed with fe
      1. chain a [45240]
    9. 1zrp
      zn-substituted
      complexed with zn
      1. chain a [45242]
    10. 1qcv
      variant pfrd-xc4 folds without iron
      1. chain a [45241]
    11. 1rwd
      mutant
      1. chain a [97977]
  6. Guillardia theta [TaxId: 55529] [57810] (2)
    1. 1h7v
      complexed with zn
      1. chain a [65713]
    2. 1dx8
      complexed with zn
      1. chain a [45243]
2. Two-iron rubredoxin [103620]
  1. Pseudomonas oleovorans [TaxId: 301] [103621] (1)
    1. 1s24
      second domain
      complexed with cd
      1. chain a [98366]
3. Rubrerythrin, C-terminal domain [57811]
  1. Desulfovibrio vulgaris [TaxId: 881] [57812] (10)
    SQ P24931
    1. 1lko
      complexed with fe2
      1. region a:148-191 [78064]
    2. 1lkp
      complexed with azi, fe2
      1. region a:148-191 [78066]
    3. 1lkm
      complexed with fe
      1. region a:148-191 [78062]
    4. 1s2z
      complexed with fe, zn
      1. region a:148-191 [105231]
    5. 1qyb
      complexed with fe, so4, zn
      1. region a:148-191 [96580]
    6. 1s30
      complexed with fe, zn
      1. region a:148-191 [105233]
    7. 1ryt
      complexed with fe
      1. region a:148-191 [45245]
    8. 1jyb
      complexed with fe, zn
      1. region a:148-191 [77207]
    9. 1dvb
      complexed with fe, zn
      1. region a:148-191 [45244]
    10. 1b71
      1. region a:148-191 [45246]
  2. Archaeon Pyrococcus furiosus [TaxId: 2261] [103622] (3)
    1. 1nnq
      structural genomics
      complexed with zn
      1. region a:135-171 [92007]
      2. region b:135-171 [92009]
    2. 2hr5
      automatically matched to d1nnqa2
      complexed with fe
      1. region a:135-171 [136683]
    3. 2hr5
      automatically matched to d1nnqa2
      complexed with fe
      1. region b:135-171 [136685]
4. Nigerythrin, C-terminal domain [144194]
  1. Desulfovibrio vulgaris [TaxId: 881] [144195] (6)
    SQ P30820 167-202
    1. 1yuz
      complexed with fe, fe2
      1. region a:167-202 [124078]
    2. 1yuz
      automatically matched to 1YUZ A:167-202
      complexed with fe, fe2
      1. region b:167-202 [124080]
    3. 1yv1
      automatically matched to 1YUX A:167-202
      complexed with fe2; mutant
      1. region a:167-202 [124085]
    4. 1yv1
      automatically matched to 1YUX A:167-202
      complexed with fe2; mutant
      1. region b:167-202 [124087]
    5. 1yux
      complexed with fe, fe2; mutant
      1. region a:167-202 [124074]
    6. 1yux
      automatically matched to 1YUX A:167-202
      complexed with fe, fe2; mutant
      1. region b:167-202 [124076]
Desulforedoxin [57813] (3)
1. Desulforedoxin [57814]
  dimeric mono-domain protein with two rubredoxin-type metal centres
  1. Desulfovibrio gigas [TaxId: 879] [57815] (4)
    1. 1dxg
      complexed with fe
      1. chain a [45247]
      2. chain b [45248]
    2. 1cfw
      Ga-substituted
      complexed with ga, so4
      1. chain a [45249]
      2. chain b [45250]
    3. 1dhg
      Hg-substituted
      complexed with hg
      1. chain a [45253]
      2. chain b [45254]
    4. 1dcd
      complexed with Cd2+
      complexed with cd
      1. chain a [45251]
      2. chain b [45252]
2. Desulfoferrodoxin N-terminal domain [57816]
  1. Desulfovibrio desulfuricans [TaxId: 876] [57817] (13)
    1. 2ji2
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2, no3; mutant
      1. region a:2-37 [138340]
    2. 2ji2
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2, no3; mutant
      1. region b:2-37 [138342]
    3. 2ji2
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2, no3; mutant
      1. region c:2-37 [138344]
    4. 2ji2
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2, no3; mutant
      1. region d:2-37 [138346]
    5. 2ji1
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2
      1. region a:2-37 [138332]
    6. 2ji1
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2
      1. region b:2-37 [138334]
    7. 2ji1
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2
      1. region c:2-37 [138336]
    8. 2ji1
      automatically matched to d1dfx_2
      complexed with ca, fe, fe2
      1. region d:2-37 [138338]
    9. 2ji3
      automatically matched to d1dfx_2
      complexed with ca, fe, no3, per; mutant
      1. region a:2-37 [138348]
    10. 2ji3
      automatically matched to d1dfx_2
      complexed with ca, fe, no3, per; mutant
      1. region b:2-37 [138350]
    11. 2ji3
      automatically matched to d1dfx_2
      complexed with ca, fe, no3, per; mutant
      1. region c:2-37 [138352]
    12. 2ji3
      automatically matched to d1dfx_2
      complexed with ca, fe, no3, per; mutant
      1. region d:2-37 [138354]
    13. 1dfx
      complexed with ca, fe
      1. region a:1-36 [45255]
  2. Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887] [111452] (3)
    SQ Q46495
    1. 1vzi
      complexed with ca, cl, fe2; mutant
      1. region a:1-37 [108968]
      2. region b:1-37 [108970]
    2. 1vzg
      complexed with ca, fc6, fe; mutant
      1. region a:2-37 [108960]
      2. region b:2-37 [108962]
    3. 1vzh
      complexed with ca, fc6, fe; mutant
      1. region a:2-37 [108964]
      2. region b:2-37 [108966]
Cytochrome c oxidase Subunit F [57818] (1)
membrane-anchored rubredoxin-like domain
1. Cytochrome c oxidase Subunit F [57819]
  1. Cow (Bos taurus) [TaxId: 9913] [57820] (21)
    1. 1v54
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. chain f [100327]
      2. chain s [100341]
    2. 2dyr
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. region f:1-98 [131905]
    3. 2dyr
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. region s:1-98 [131919]
    4. 1v55
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. chain f [100355]
      2. chain s [100369]
    5. 2eij
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region f:1-98 [132145]
    6. 2eij
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region s:1-98 [132159]
    7. 2eil
      automatically matched to d1occf_
      complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region f:1-98 [132201]
    8. 2eil
      automatically matched to d1occf_
      complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region s:1-98 [132215]
    9. 2eik
      automatically matched to d1occf_
      complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region f:1-98 [132173]
    10. 2eik
      automatically matched to d1occf_
      complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region s:1-98 [132187]
    11. 2dys
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. region f:1-98 [131933]
    12. 2dys
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      1. region s:1-98 [131947]
    13. 2occ
      complexed with cu, hea, mg, na, per, zn
      1. chain f [45256]
      2. chain s [45257]
    14. 1ocr
      complexed with cu, hea, mg, na, zn
      1. chain f [45258]
      2. chain s [45259]
    15. 2eim
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region f:1-98 [132229]
    16. 2eim
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region s:1-98 [132243]
    17. 2ein
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region f:1-98 [132257]
    18. 2ein
      automatically matched to d1occf_
      complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
      1. region s:1-98 [132271]
    19. 1occ
      complexed with cu, hea, mg, zn
      1. chain f [45260]
      2. chain s [45261]
    20. 1ocz
      complexed with azi, cu, hea, mg, na, zn
      1. chain f [45262]
      2. chain s [45263]
    21. 1oco
      complexed with cmo, cu, hea, mg, na, zn
      1. chain f [45264]
      2. chain s [45265]