Structural Classification of Proteins
home mail help root up expand collapse

Family: Nucleolar RNA-binding protein Nop10-like

Pfam 04135; contains N-terminal zinc-finger domain similar to the insert finger of the Initiation factor eIF2 gamma subunit (scop_pr 75204)

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Rubredoxin-like [57769]
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily: Nop10-like SnoRNP [144210]
    link to SUPERFAMILY database - Superfamily
  5. Family: Nucleolar RNA-binding protein Nop10-like [144211]
    Pfam 04135; contains N-terminal zinc-finger domain similar to the insert finger of the Initiation factor eIF2 gamma subunit (scop_pr 75204)

Protein Domains:

  1. H/aca ribonucleoprotein complex subunit 3 [144212]
    lacks the zinc-binding site, mostly unstructured
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [144213] (2)
      SQ Q6Q547 2-58
      1. 2aqa picpic
        1. region a:2-58 [127168] picpiclink
      2. 1y2y picpic
        automatically matched to 2AQA A:2-58
        1. region a:2-58 [122575] picpiclink
  2. Ribosome biogenesis protein Nop10 [144214]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [144215] (4)
      SQ Q8U1R4 4-55
      1. 2ey4 picpicxrefxrefxrefxrefxrefxref
        complexed with zn
        1. region e:4-55 [132584] picpiclink
      2. 2ey4 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2EY4 E:4-55
        complexed with zn
        1. region f:4-55 [132585] picpiclink
      3. 2hvy picpicxrefxrefxrefxref
        complexed with atp, zn; mutant
        1. region c:3-55 [145412] picpiclink
      4. 2rfk picpicxrefxrefxref
        automatically matched to d2ey4e1
        complexed with zn; mutant
        1. region b:4-55 [151998] picpiclink
    2. Archaeon Methanococcus jannaschii [TaxId: 2190] [144216] (2)
      SQ P81303 1-60
      1. 2apo picpicxrefxref
        automatically matched to 2AQC A:1-60
        complexed with k, zn
        1. region b:403-457 [127135] picpiclink
      2. 2aqc picpic
        complexed with zn
        1. region a:1-60 [127177] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk