Structural Classification of Proteins
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Superfamily: Zn-binding ribosomal proteins

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Rubredoxin-like [57769]
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily: Zn-binding ribosomal proteins [57829]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribosomal protein L37ae [57830] (1)
    1. Ribosomal protein L37ae [57831]
      1. Archaeon Haloarcula marismortui [TaxId: 2238] [57832] (58) picpic
        SQ P60619
  2. Ribosomal protein L37e [57833] (1)
    1. Ribosomal protein L37e [57834]
      1. Archaeon Haloarcula marismortui [TaxId: 2238] [57835] (40) picpic
        SQ P32410
  3. Ribosomal protein L44e [57836] (1)
    1. Ribosomal protein L44e [57837]
      1. Archaeon Haloarcula marismortui [TaxId: 2238] [57838] (40) picpic
        SQ P32411
  4. Ribosomal protein S27e [90217] (1)
    1. Ribosomal protein S27e [90218]
      1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [90219] (1) picpic
  5. Ribosomal protein L32p [144200] (3)
    Pfam 01783; metal ion-binding site is lost in some members; includes the N-terminal, mainly helical tail
    1. Ribosomal protein L32p [144201]
      1. Escherichia coli [TaxId: 562] [144202] (27) picpic
        SQ P0A7N4 1-56
      2. Thermus thermophilus [TaxId: 274] [161177] (7) picpic
        SQ P80339 1-59
      3. Deinococcus radiodurans [TaxId: 1299] [161178] (10) picpic
        SQ P49228 2-59
  6. Ribosomal protein L33p [144203] (3)
    Pfam 00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members
    1. Ribosomal protein L33p [144204]
      1. Escherichia coli [TaxId: 562] [144205] (9) picpic
        SQ P0A7N9 1-54
      2. Deinococcus radiodurans [TaxId: 1299] [161179] (6) picpic
        SQ Q9RSS4 2-54
      3. Thermus thermophilus [TaxId: 274] [161180] (9) picpic
        SQ P35871 8-52
  7. Ribosomal protein L40e [161181] (1)
    Pfam 01020
    1. Ribosomal protein L40e [161182]
      1. Sulfolobus solfataricus [TaxId: 2287] [161183] (1) picpic
        SQ Q980V5 1-56
  8. Ribosomal protein S27a [161184] (1)
    Pfam 01599
    1. Ribosomal protein S27ae [161185]
      1. Thermoplasma acidophilum [TaxId: 2303] [161186] (1) picpic
        SQ Q9HJ78 1-55
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk