Superfamily: LDL receptor-like module

uperfamily

Lineage:

1. Root: scop
2. Class: Small proteins [56992]
   Usually dominated by metal ligand, heme, and/or disulfide bridges
3. Fold: LDL receptor-like module [57423]
   disulfide-rich calcium-binding fold
4. Superfamily: LDL receptor-like module [57424]
   uperfamily

Families:

1. LDL receptor-like module [57425] (6)
   1. Ligand-binding domain of low-density lipoprotein receptor [57426]
      1. Human (Homo sapiens) [TaxId: 9606] [57427] (13)
         SQ P01130 272-353
         1. 2fcw
            automatically matched to d1n7da6
            complexed with ca, mpd, na; mutant
            1. region b:86-124 [133289]
         2. 2fcw
            automatically matched to d1n7da7
            complexed with ca, mpd, na; mutant
            1. region b:125-163 [133290]
         3. 1ajj
            fifth module
            complexed with ca, so4
            1. chain a [44609]
         4. 1j8e
            seventh module
            complexed with ca; mutant
            1. chain a [66437]
         5. 1f5y
            a concatemer of the first and second modules
            complexed with ca
            1. region a:1-44 [44610]
            2. region a:45-85 [44611]
         6. 1f8z
            sixth module
            complexed with ca
            1. chain a [44612]
         7. 1d2l
            complement-like repeat cr3
            1. chain a [44614]
         8. 1ldl
            first module
            1. chain a [44615]
         9. 1xfe
            complexed with ca
            1. region a:1-44 [115260]
         10. 1cr8
             complement module 8
             complexed with ca
             1. chain a [44613]
         11. 1ldr
             second module
             1. chain a [44616]
         12. 1d2j
             sixth module
             complexed with ca; mutant
             1. chain a [44617]
         13. 1n7d
             all but the first modules in the whole receptor structure context
             complexed with ca, keg, man, nag; mutant
             1. region a:44-83 [80240]
             2. region a:84-124 [80241]
             3. region a:125-174 [80242]
             4. region a:175-211 [80243]
             5. region a:212-251 [80244]
             6. region a:252-295 [80245]
   2. soluble Tva ectodomain, sTva47 [69953]
      the viral-binding domain of Tva
      1. Quail (Coturnix coturnix) [TaxId: 9091] [69954] (2)
         1. 1k7b
            1. chain a [68266]
         2. 1jrf
            complexed with ca
            1. chain a [71824]
   3. Very low-density lipoprotein receptor [103571]
      1. Human (Homo sapiens) [TaxId: 9606] [103572] (1)
         1. 1v9u
            LDL-receptor class A domain 3
            complexed with ca, dao
            1. chain 5 [100553]
   4. Hemoglobin linker chain l1 [144109]
      1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [144110] (1)
         SQ Q9GV76 85-126
         1. 2gtl
            complexed with ca, cmo, hem, zn
            1. region m:60-101 [135668]
   5. Extracellular hemoglobin linker l2 subunit [144111]
      1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [144112] (1)
         SQ Q2I743 98-138
         1. 2gtl
            complexed with ca, cmo, hem, zn
            1. region n:61-101 [135671]
   6. Extracellular hemoglobin linker l3 subunit [144113]
      1. Common earthworm (Lumbricus terrestris) [TaxId: 6398] [144114] (1)
         SQ Q2I742 78-118
         1. 2gtl
            complexed with ca, cmo, hem, zn
            1. region o:60-100 [135674]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk