Structural Classification of Proteins
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Fold: Diaminopimelate epimerase-like

mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Diaminopimelate epimerase-like [54505]
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix

Superfamilies:

  1. Diaminopimelate epimerase-like [54506] (4)
    duplication: consists of two similar domain swapped with C-terminal strands
    link to SUPERFAMILY database - Superfamily
    1. Diaminopimelate epimerase [54507] (1)
      1. Diaminopimelate epimerase [54508]
        1. Haemophilus influenzae [TaxId: 727] [54509] (10) picpic
    2. PhzC/PhzF-like [89863] (4)
      Pfam 02567
      1. Hypothetical protein YddE [89864]
        1. Escherichia coli [TaxId: 562] [89865] (3) picpic
          SQ P37757
          structural genomics; NESG target ET25
      2. Hypothetical protein EF0119 [102852]
        1. Enterococcus faecalis [TaxId: 1351] [102853] (1) picpic
      3. Hypothetical protein PA4716 [110861]
        1. Pseudomonas aeruginosa [TaxId: 287] [110862] (1) picpic
          SQ Q9HV82
      4. Phenazine biosynthesis protein PhzF [117861]
        1. Pseudomonas fluorescens [TaxId: 294] [117862] (6) picpic
          SQ Q51792
    3. Proline racemase [110863] (1)
      Pfam 05544
      1. Proline racemase [110864]
        1. Brucella melitensis [TaxId: 29459] [110865] (1) picpic
          SQ Q8YFD6
    4. PA0793-like [160123] (1)
      Pfam 04303; DUF453
      1. Hypothetical protein PA0793 [160124]
        1. Pseudomonas aeruginosa [TaxId: 287] [160125] (2) picpic
          SQ Q9I5E5 1-182! SQ Q9I5E5 187-395
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk