Structural Classification of Proteins
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Fold: Phospholipase D/nuclease

beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Phospholipase D/nuclease [56023]
    beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234

Superfamilies:

  1. Phospholipase D/nuclease [56024] (5)
    link to SUPERFAMILY database - Superfamily
    1. Nuclease [56025] (1)
      1. Nuclease Nuc [56026]
        1. Salmonella typhimurium [TaxId: 90371] [56027] (2) picpic
    2. Phospholipase D [64391] (1)
      duplication: contains two domains of this fold arranged as in the Nuc dimer
      1. Phospholipase D [64392]
        1. Streptomyces sp. [TaxId: 1931] [64393] (8) picpic
          SQ P84147
    3. Tyrosyl-DNA phosphodiesterase TDP1 [69815] (2)
      1. Tyrosyl-DNA phosphodiesterase TDP1 [69816]
        1. Human (Homo sapiens) [TaxId: 9606] [69817] (12) picpic
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [111180] (1) picpic
          SQ P38319 79-538
    4. Polyphosphate kinase C-terminal domain [143860] (2)
      C-terminal part of Pfam 02503; similar to PLD; contains two domains of this fold arranged as in the Nuc dimer
      1. Polyphosphate kinase, PPK [143861]
        1. Porphyromonas gingivalis [TaxId: 837] [143862] (4) picpic
          SQ Q7MTR1 318-505! SQ Q7MTR1 506-691
        2. Escherichia coli [TaxId: 562] [143863] (8) picpic
          SQ P0A7B1 315-501! SQ P0A7B1 502-688
    5. TrmB middle domain-like [160780] (1)
      N-terminal part of PfamB 004822
      1. Transcriptional regulator TrmB [160781]
        1. Thermococcus litoralis [TaxId: 2265] [160782] (1) picpic
          SQ Q7LYW4 110-246
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk