Structural Classification of Proteins

Superfamily: Ribonuclease PH domain 2-like

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ribonuclease PH domain 2-like [55665]
beta(2)-alpha-beta(2)-alpha; 3 layers: alpha/beta/alpha; antiparallel sheet: order 2134
Superfamily: Ribonuclease PH domain 2-like [55666]
uperfamily

Families:

Ribonuclease PH domain 2-like [55667] (14)
1. Ribonuclease PH, domain 2 [103150]
  1. Aquifex aeolicus [TaxId: 63363] [103151] (4)
    1. 1uds
      complexed with po4, so4; mutant
      1. region a:151-255 [99220]
    2. 1udq
      complexed with po4, so4; mutant
      1. region a:151-255 [99218]
    3. 1udo
      complexed with po4, so4; mutant
      1. region a:151-255 [99216]
    4. 1udn
      complexed with po4, so4
      1. region a:151-255 [99214]
  2. Pseudomonas aeruginosa [TaxId: 287] [103152] (2)
    1. 1r6l
      complexed with nhe, so4
      1. region a:152-239 [97154]
    2. 1r6m
      complexed with po4
      1. region a:152-239 [97156]
  3. Bacillus subtilis [TaxId: 1423] [103153] (3)
    1. 1oys
      mutant
      1. region a:152-237 [93759]
    2. 1oyp
      complexed with sul
      1. region a:152-243 [93735]
      2. region b:152-243 [93737]
      3. region c:152-243 [93739]
      4. region d:152-243 [93741]
      5. region e:152-243 [93743]
      6. region f:152-243 [93745]
    3. 1oyr
      complexed with cd, sul
      1. region a:152-242 [93747]
      2. region b:152-242 [93749]
      3. region c:152-242 [93751]
      4. region d:152-242 [93753]
      5. region e:152-242 [93755]
      6. region f:152-242 [93757]
2. Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 [55668]
  duplication of two-domain units formed by domains 1-2 and 4-5
  1. Streptomyces antibioticus [TaxId: 1890] [55669] (2)
    1. 1e3h
      complexed with so4
      1. region a:152-262 [40695]
      2. region a:483-578 [40696]
    2. 1e3p
      complexed with so4, wo4
      1. region a:152-262 [40697]
      2. region a:483-578 [40698]
3. Exosome complex exonuclease RRP45 [160586]
  1. Human (Homo sapiens) [TaxId: 9606] [160587] (1)
    SQ Q86Y41 185-302
    1. 2nn6
      mutant
      1. region a:185-302 [148296]
4. Exosome complex exonuclease RRP42 [160588]
  1. Human (Homo sapiens) [TaxId: 9606] [160589] (1)
    SQ Q15024 192-285
    1. 2nn6
      mutant
      1. region e:192-285 [148304]
5. Exosome complex exonuclease 1, ECX1 [160590]
  1. Sulfolobus solfataricus [TaxId: 2287] [160591] (50)
    SQ Q9UXC2 156-241! SQ Q9UXC2 156-248
    1. 2je6
      complexed with 1pe, cl, peg; mutant
      1. region b:156-241 [147994]
    2. 2jea
      automatically matched to 2JE6 B:156-241
      complexed with 1pe; mutant
      1. region b:156-241 [148011]
    3. 2jeb
      automatically matched to 2JE6 B:156-241
      complexed with 1pe, cl, mn; mutant
      1. region b:156-241 [148018]
    4. 2br2
      complexed with cl
      1. region b:156-248 [146168]
    5. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region d:156-248 [146172]
    6. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region f:156-248 [146176]
    7. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region h:156-248 [146180]
    8. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region j:156-248 [146184]
    9. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region l:156-248 [146188]
    10. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region n:156-248 [146192]
    11. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region p:156-248 [146196]
    12. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region r:156-248 [146200]
    13. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region t:156-248 [146204]
    14. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region v:156-248 [146208]
    15. 2br2
      automatically matched to 2BR2 B:156-248
      complexed with cl
      1. region x:156-248 [146212]
    16. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region b:156-248 [146231]
    17. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region d:156-248 [146235]
    18. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region f:156-248 [146239]
    19. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region h:156-248 [146243]
    20. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region j:156-248 [146247]
    21. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region l:156-248 [146251]
    22. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region n:156-248 [146255]
    23. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region p:156-248 [146259]
    24. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region r:156-248 [146263]
    25. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region t:156-248 [146267]
    26. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region v:156-248 [146271]
    27. 2c37
      automatically matched to 2BR2 B:156-248
      complexed with cl, na, rp5, u5p
      1. region x:156-248 [146275]
    28. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region b:156-248 [146279]
    29. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region d:156-248 [146283]
    30. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region f:156-248 [146287]
    31. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region h:156-248 [146291]
    32. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region j:156-248 [146295]
    33. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region l:156-248 [146299]
    34. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region n:156-248 [146303]
    35. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region p:156-248 [146307]
    36. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region r:156-248 [146311]
    37. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region t:156-248 [146315]
    38. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region v:156-247 [146319]
    39. 2c38
      automatically matched to 2BR2 B:156-248
      complexed with amp, cl
      1. region x:156-248 [146323]
    40. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region b:156-248 [146327]
    41. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region d:156-248 [146331]
    42. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region f:156-248 [146335]
    43. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region j:156-248 [146341]
    44. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region l:156-248 [146345]
    45. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region n:156-248 [146349]
    46. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region p:156-248 [146353]
    47. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region r:156-248 [146357]
    48. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region t:156-248 [146361]
    49. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region v:156-247 [146365]
    50. 2c39
      automatically matched to 2BR2 B:156-248
      complexed with adp
      1. region x:156-248 [146369]
  2. Archaeoglobus fulgidus [TaxId: 2234] [160592] (6)
    SQ O29757 154-252
    1. 2ba0
      1. region d:154-252 [146106]
    2. 2ba0
      automatically matched to 2BA0 D:154-252
      1. region e:154-252 [146108]
    3. 2ba0
      automatically matched to 2BA0 D:154-252
      1. region f:154-252 [146110]
    4. 2ba1
      automatically matched to 2BA0 D:154-252
      complexed with zn
      1. region d:154-252 [146118]
    5. 2ba1
      automatically matched to 2BA0 D:154-252
      complexed with zn
      1. region e:154-252 [146120]
    6. 2ba1
      automatically matched to 2BA0 D:154-252
      complexed with zn
      1. region f:154-252 [146122]
6. Exosome complex exonuclease RRP41 [160593]
  1. Human (Homo sapiens) [TaxId: 9606] [160594] (1)
    SQ Q9NPD3 152-241
    1. 2nn6
      mutant
      1. region b:151-240 [148298]
7. Exosome complex exonuclease RRP46 [160595]
  1. Human (Homo sapiens) [TaxId: 9606] [160596] (1)
    SQ Q9NQT4 147-235
    1. 2nn6
      mutant
      1. region d:147-235 [148302]
8. Exosome complex exonuclease 2, ECX2 [160597]
  1. Archaeoglobus fulgidus [TaxId: 2234] [160598] (6)
    SQ O29756 179-257
    1. 2ba0
      1. region g:179-257 [146112]
    2. 2ba0
      automatically matched to 2BA0 G:179-257
      1. region h:179-257 [146114]
    3. 2ba0
      automatically matched to 2BA0 G:179-257
      1. region i:179-257 [146116]
    4. 2ba1
      automatically matched to 2BA0 G:179-257
      complexed with zn
      1. region g:179-257 [146124]
    5. 2ba1
      automatically matched to 2BA0 G:179-257
      complexed with zn
      1. region h:179-257 [146126]
    6. 2ba1
      automatically matched to 2BA0 G:179-257
      complexed with zn
      1. region i:179-257 [146128]
  2. Sulfolobus solfataricus [TaxId: 2287] [160599] (51)
    SQ Q9UXC0 192-275
    1. 2je6
      complexed with 1pe, cl, peg; mutant
      1. region a:192-275 [147992]
    2. 2jea
      automatically matched to 2JE6 A:192-275
      complexed with 1pe; mutant
      1. region a:192-275 [148009]
    3. 2jeb
      automatically matched to 2JE6 A:192-275
      complexed with 1pe, cl, mn; mutant
      1. region a:192-275 [148016]
    4. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region a:192-275 [146166]
    5. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region c:192-275 [146170]
    6. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region e:192-275 [146174]
    7. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region g:192-275 [146178]
    8. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region i:192-275 [146182]
    9. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region k:192-275 [146186]
    10. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region m:192-275 [146190]
    11. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region o:192-275 [146194]
    12. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region q:192-275 [146198]
    13. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region s:192-275 [146202]
    14. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region u:192-275 [146206]
    15. 2br2
      automatically matched to 2JE6 A:192-275
      complexed with cl
      1. region w:192-275 [146210]
    16. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region a:192-275 [146229]
    17. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region c:192-275 [146233]
    18. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region e:192-275 [146237]
    19. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region g:192-275 [146241]
    20. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region i:192-275 [146245]
    21. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region k:192-275 [146249]
    22. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region m:192-275 [146253]
    23. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region o:192-275 [146257]
    24. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region q:192-275 [146261]
    25. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region s:192-275 [146265]
    26. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region u:192-275 [146269]
    27. 2c37
      automatically matched to 2JE6 A:192-275
      complexed with cl, na, rp5, u5p
      1. region w:192-275 [146273]
    28. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region a:192-275 [146277]
    29. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region c:192-275 [146281]
    30. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region e:192-275 [146285]
    31. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region g:192-275 [146289]
    32. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region i:192-275 [146293]
    33. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region k:192-275 [146297]
    34. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region m:192-275 [146301]
    35. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region o:192-275 [146305]
    36. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region q:192-275 [146309]
    37. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region s:192-275 [146313]
    38. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region u:192-274 [146317]
    39. 2c38
      automatically matched to 2JE6 A:192-275
      complexed with amp, cl
      1. region w:192-275 [146321]
    40. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region a:192-275 [146325]
    41. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region c:192-275 [146329]
    42. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region e:192-275 [146333]
    43. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region g:192-275 [146337]
    44. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region i:192-275 [146339]
    45. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region k:192-275 [146343]
    46. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region m:192-275 [146347]
    47. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region o:192-275 [146351]
    48. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region q:192-275 [146355]
    49. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region s:192-274 [146359]
    50. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region u:192-274 [146363]
    51. 2c39
      automatically matched to 2JE6 A:192-275
      complexed with adp
      1. region w:192-275 [146367]
9. Exosome complex exonuclease MTR3 [160600]
  1. Human (Homo sapiens) [TaxId: 9606] [160601] (1)
    SQ Q5RKV6 176-270
    1. 2nn6
      mutant
      1. region f:176-270 [148306]
10. Exosome complex exonuclease RRP43 [160602]
  1. Human (Homo sapiens) [TaxId: 9606] [160603] (1)
    SQ Q96B26 188-276
    1. 2nn6
      mutant
      1. region c:188-276 [148300]