Structural Classification of Proteins
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Fold: Origin of replication-binding domain, RBD-like

alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Origin of replication-binding domain, RBD-like [55463]
    alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

Superfamilies:

  1. Origin of replication-binding domain, RBD-like [55464] (5)
    link to SUPERFAMILY database - Superfamily
    1. The origin DNA-binding domain of SV40 T-antigen [55465] (1)
      1. The origin DNA-binding domain of SV40 T-antigen [55466]
        1. Simian virus 40, Sv40 [TaxId: 10633] [55467] (14) picpic
    2. DNA-binding domain of REP protein [82728] (1)
      1. DNA-binding domain of REP protein [82729]
        1. Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735] [82730] (2) picpic
    3. Replication initiation protein E1 [64332] (2)
      1. Replication initiation protein E1 [64333]
        1. Bovine papillomavirus [TaxId: 10571] [64334] (3) picpic
        2. Human papillomavirus type 18 [TaxId: 333761] [103119] (1) picpic
    4. Replication protein Rep, nuclease domain [75492] (1)
      1. Replication protein Rep, nuclease domain [75493]
        1. Adeno-associated virus, aav-5 [TaxId: 272636] [75494] (3) picpic
    5. Relaxase domain [103120] (2)
      circular permutation of the common fold
      1. F factor TraI relaxase [103121]
        1. Escherichia coli [TaxId: 562] [103122] (1) picpic
      2. TrwC relaxase [103123]
        1. Escherichia coli [TaxId: 562] [103124] (5) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk