Structural Classification of Proteins
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Superfamily: Lysozyme-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Lysozyme-like [53954]
    common alpha+beta motif for the active site region
  4. Superfamily: Lysozyme-like [53955]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Family 19 glycosidase [53956] (2)
    1. Plant class II chitinase [53957]
      1. Barley (Hordeum vulgare) [TaxId: 4513] [53958] (2) picpic
      2. Jack bean (Canavalia ensiformis) [TaxId: 3823] [53959] (1) picpic
  2. C-type lysozyme [53960] (20)
    1. Lysozyme [53961]
      ubiquitous in a variety of tissues and secretions
      1. Chicken (Gallus gallus) [TaxId: 9031] [53962] (280) picpic
        SQ P00698
      2. Turkey (Meleagris gallopavo) [TaxId: 9103] [53963] (13) picpic
      3. Guinea fowl (Numida meleagris) [TaxId: 8996] [53964] (2) picpic
      4. Pheasant (Phasianus colchicus) [TaxId: 9054] [53965] (2) picpic
      5. Bobwhite quail (Colinus virginianus) [TaxId: 9014] [53966] (3) picpic
      6. Japanese quail (Coturnix coturnix japonica) [TaxId: 93934] [53967] (1) picpic
      7. Human (Homo sapiens) [TaxId: 9606] [53969] (205) picpic
        SQ P00695
      8. Horse (Equus caballus), milk [TaxId: 9796] [53970] (1) picpic
      9. Dog (Canis familiaris), milk [TaxId: 9615] [53971] (5) picpic
      10. Mouse (Mus musculus) [TaxId: 10090] [75329] (1) picpic
      11. Australian echidna (Tachyglossus aculeatus) [TaxId: 9261] [53972] (1) picpic
      12. Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022] [53973] (7) picpic
      13. Silkworm (Bombyx mori) [TaxId: 7091] [64201] (1) picpic
      14. Tasar silkworm (Antheraea mylitta) [TaxId: 34739] [69627] (1) picpic
        induced antibacterial protein
    2. alpha-Lactalbumin [53975]
      expressed only in the lactating mammary gland, strongly binds calcium ion
      1. Yellow baboon (Papio cynocephalus) [TaxId: 9556] [53976] (1) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [53977] (3) picpic
      3. Guinea pig (Cavia porcellus) [TaxId: 10141] [53978] (1) picpic
      4. Goat (Capra hircus) [TaxId: 9925] [53979] (4) picpic
      5. Cow (Bos taurus) [TaxId: 9913] [53980] (9) picpic
      6. Mouse (Mus musculus) [TaxId: 10090] [69628] (15) picpic
  3. Phage lysozyme [53981] (3)
    1. Phage T4 lysozyme [53982]
      1. Bacteriophage T4 [TaxId: 10665] [53983] (446) picpic
        SQ P00720
        many mutant structures
    2. Tail-associated lysozyme gp5, catalytic domain [69629]
      1. Bacteriophage T4 [TaxId: 10665] [69630] (1) picpic
    3. Endolysin Lyz [117758]
      1. Bacteriophage P1 [TaxId: 10678] [117759] (2) picpic
        SQ Q37875 1-185
  4. Lambda lysozyme [53984] (1)
    1. Lambda lysozyme [53985]
      1. Bacteriophage lambda [TaxId: 10710] [53986] (4) picpic
  5. G-type lysozyme [53987] (2)
    1. Lysozyme [53988]
      1. Western graylag goose (Anser anser anser) [TaxId: 8844] [53989] (2) picpic
      2. Australian black swan (Cygnus atratus) [TaxId: 8868] [53990] (2) picpic
  6. Bacterial muramidase, catalytic domain [53991] (2)
    the large N-terminal domain is all-alpha superhelix
    1. 70 kDa soluble lytic transglycosylase, SLT70 [53992]
      1. Escherichia coli [TaxId: 562] [53993] (3) picpic
    2. 36 kDa soluble lytic transglycosylase, SLT35 [53994]
      1. Escherichia coli [TaxId: 562] [53995] (8) picpic
  7. Chitosanase [53996] (2)
    1. Endochitosanase [53997]
      1. Streptomyces sp., strain N174 [TaxId: 1931] [53998] (1) picpic
      2. Bacillus circulans [TaxId: 1397] [53999] (1) picpic
  8. RPF-like [159824] (1)
    Pfam 06737; Transglycosylase-like domain
    1. Probable resuscitation-promoting factor RpfB [159825]
      1. Mycobacterium tuberculosis [TaxId: 1773] [159826] (1) picpic
        SQ O05594 247-362
  9. NMB1012-like [159827] (2)
    Pfam 05838; predicted lysozyme (DUF847)
    1. Hypothetical protein NMB1012 [159828]
      1. Neisseria meningitidis [TaxId: 487] [159829] (8) picpic
        SQ Q7DDI9 1-153
    2. Putative secretion activator PG0293 [159830]
      1. Porphyromonas gingivalis [TaxId: 837] [159831] (1) picpic
        SQ Q7MXB3 1-192
  10. PBP transglycosylase domain-like [159832] (2)
    Pfam 00912; lacking the characteristic beta-sheet; otherwise has a similar fold to the Family 19 glycosidase
    1. Penicillin-binding protein 1a, PBP1a [159833]
      1. Aquifex aeolicus [TaxId: 63363] [159834] (2) picpic
        SQ O66874 57-243
    2. Penicillin-binding protein 2, PBP2 [159835]
      1. Staphylococcus aureus [TaxId: 1280] [159836] (7) picpic
        SQ Q2YY56 67-292
  11. PA2222-like [159837] (1)
    PfamB 104465
    1. Hypothetical protein PA2222 [159838]
      1. Pseudomonas aeruginosa [TaxId: 287] [159839] (8) picpic
        SQ Q9I1P7 4-215
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk