Structural Classification of Proteins
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Superfamily: L30e-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Bacillus chorismate mutase-like [55297]
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. Superfamily: L30e-like [55315]
    link to SUPERFAMILY database - Superfamily

Families:

  1. L30e/L7ae ribosomal proteins [55316] (11)
    1. Eukaryotic ribosomal protein L30 (L30e) [55317]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55318] (4) picpic
        SQ P14120
      2. Archaeon Thermococcus celer [TaxId: 2264] [89986] (8) picpic
    2. Ribosomal protein L7ae [55319]
      1. Archaeon Pyrococcus abyssi [TaxId: 29292] [103081] (2) picpic
      2. Archaeon Haloarcula marismortui [TaxId: 2238] [55320] (58) picpic
        SQ P12743
      3. Archaeon Methanococcus jannaschii [TaxId: 2190] [111033] (3) picpic
        SQ P54066
      4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [111034] (1) picpic
        SQ O29494 # AF0764
      5. Aeropyrum pernix [TaxId: 56636] [160501] (1) picpic
        SQ Q9YAX7 4-127
      6. Pyrococcus furiosus [TaxId: 2261] [160502] (1) picpic
        SQ Q8U160 3-123
      7. Cryptosporidium parvum [TaxId: 5807] [160503] (1) picpic
        SQ Q7YYQ3 17-131
    3. Spliceosomal 15.5kd protein [55321]
      1. Human (Homo sapiens) [TaxId: 9606] [55322] (4) picpic
    4. Small nuclear ribonucleoprotein-associated protein 1, Snu13p [160504]
      1. Saccharomyces cerevisiae [TaxId: 4932] [160505] (3) picpic
        SQ P39990 1-126! SQ P39990 2-126
  2. RNA 2'-O ribose methyltransferase substrate binding domain [75480] (2)
    1. RrmA (RrmH), N-terminal domain [75481]
      23S rRNA methyltransferase; proposed gene names are as appear in the original publication (and the PDB entry)
      1. Thermus thermophilus [TaxId: 274] [75482] (1) picpic
    2. RlmB, N-terminal domain [82721]
      23S rRNA G2251 2'O-methytransferase
      1. Escherichia coli [TaxId: 562] [82722] (1) picpic
  3. ERF1/Dom34 C-terminal domain-like [55323] (4)
    1. C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [55324]
      contains a large insertion forming a separate (sub)domain
      1. Human (Homo sapiens) [TaxId: 9606] [55325] (1) picpic
    2. Cell division protein pelota [160506]
      1. Human (Homo sapiens) [TaxId: 9606] [160507] (1) picpic
        SQ Q9BRX2 261-371
      2. Thermoplasma acidophilum [TaxId: 2303] [160508] (1) picpic
        SQ Q9HJ74 244-338
    3. Dom34 [160509]
      1. Saccharomyces cerevisiae [TaxId: 4932] [160510] (3) picpic
        SQ P33309 278-381
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk