Structural Classification of Proteins

Superfamily: YjgF-like

: forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Bacillus chorismate mutase-like [55297]
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
Superfamily: YjgF-like [55298]
forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
uperfamily

Families:

YjgF/L-PSP [55299] (15)
some members possess an endoribonuclease activity inhibiting mRNA translation
1. Conserved 'hypothetical' protein YjgF [55300]
  1. Escherichia coli [TaxId: 562] [55301] (1)
    1. 1qu9
      contains phosphorylated cysteine
      1. chain a [39755]
      2. chain b [39756]
      3. chain c [39757]
  2. Haemophilus influenzae [TaxId: 727] [82719] (1)
    YjgF homologue HI0719
    1. 1j7h
      1. chain a [77097]
      2. chain b [77098]
      3. chain c [77099]
2. Hypothetical protein YjgH [103075]
  1. Escherichia coli [TaxId: 562] [103076] (1)
    1. 1pf5
      structural genomics
      complexed with hg
      1. chain a [94604]
3. Purine regulatory protein YabJ [55302]
  1. Bacillus subtilis [TaxId: 1423] [55303] (1)
    1. 1qd9
      1. chain a [39758]
      2. chain b [39759]
      3. chain c [39760]
  2. Clostridium thermocellum [TaxId: 1515] [118024] (1)
    SQ Q4CI45
    1. 1xrg
      Structural genomics target
      complexed with unx
      1. chain a [115868]
      2. chain b [115869]
      3. chain c [115870]
4. Highdosage growth inhibitor YER057cp (YEO7_YEAST) [64319]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64320] (1)
    1. 1jd1
      1. chain a [62890]
      2. chain b [62891]
      3. chain c [62892]
      4. chain d [62893]
      5. chain e [62894]
      6. chain f [62895]
5. 14.5 kda translational inhibitor protein, L-PSP [89979]
  mammalian tumor associated antigen UK114
  1. Human (Homo sapiens) [TaxId: 9606] [89980] (1)
    1. 1oni
      complexed with bez
      1. chain a [87144]
      2. chain b [87145]
      3. chain c [87146]
      4. chain d [87147]
      5. chain e [87148]
      6. chain f [87149]
      7. chain g [87150]
      8. chain h [87151]
      9. chain i [87152]
  2. Goat (Capra hircus) [TaxId: 9925] [103077] (1)
    1. 1nq3
      1. chain a [92039]
      2. chain b [92040]
      3. chain c [92041]
      4. chain d [92042]
      5. chain e [92043]
      6. chain f [92044]
  3. Rat (Rattus norvegicus) [TaxId: 10116] [103078] (1)
    Perchloric acid soluble protein
    1. 1qah
      1. chain a [96338]
      2. chain b [96339]
6. Hypothetical protein ST0811 [143521]
  1. Sulfolobus tokodaii [TaxId: 111955] [143522] (2)
    SQ Q973T6 1-124
    1. 1x25
      1. region a:1-124 [121619]
    2. 1x25
      automatically matched to 1X25 A:1-124
      1. region b:1-124 [121620]
7. Putative endonuclease APE1501 [143523]
  1. Aeropyrum pernix [TaxId: 56636] [143524] (1)
    SQ Q9YBU8 4-119
    1. 2cwj
      1. region a:4-119 [130924]
8. Putative protein synthesis inhibitor TM0215 [143525]
  1. Thermotoga maritima [TaxId: 2336] [143526] (2)
    SQ Q9WY58 2-127
    1. 2b33
      complexed with ca, edo
      1. region a:2-127 [127765]
    2. 2b33
      automatically matched to 2B33 A:2-127
      complexed with ca, edo
      1. region b:2-127 [127766]
9. Hypothetical protein SPy2060 [143527]
  1. Streptococcus pyogenes [TaxId: 1314] [143528] (12)
    SQ Q99XS4 3-122
    1. 2ewc
      complexed with gol
      1. region a:3-122 [132454]
    2. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region b:3-122 [132455]
    3. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region c:3-122 [132456]
    4. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region d:3-121 [132457]
    5. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region e:3-122 [132458]
    6. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region f:3-122 [132459]
    7. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region g:3-122 [132460]
    8. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region h:3-122 [132461]
    9. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region i:3-122 [132462]
    10. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region j:3-122 [132463]
    11. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region k:3-122 [132464]
    12. 2ewc
      automatically matched to 2EWC A:3-122
      complexed with gol
      1. region l:3-122 [132465]
10. Putative translation intiation inhibitor TTHA0137 [143529]
  1. Thermus thermophilus [TaxId: 274] [143530] (13)
    SQ Q5SM06 1-124
    1. 2cvl
      automatically matched to 2CSL A:1-124
      1. region a:1-124 [130871]
    2. 2cvl
      automatically matched to 2CSL A:1-124
      1. region b:1-124 [130872]
    3. 2cvl
      automatically matched to 2CSL A:1-124
      1. region c:1-124 [130873]
    4. 2cvl
      automatically matched to 2CSL A:1-124
      1. region d:1-124 [130874]
    5. 2cvl
      automatically matched to 2CSL A:1-124
      1. region e:1-124 [130875]
    6. 2cvl
      automatically matched to 2CSL A:1-124
      1. region f:1-124 [130876]
    7. 2cw4
      automatically matched to 2CSL A:1-124
      1. region a:1-124 [130919]
    8. 2csl
      1. region a:1-124 [130772]
    9. 2csl
      automatically matched to 2CSL A:1-124
      1. region b:1-124 [130773]
    10. 2csl
      automatically matched to 2CSL A:1-124
      1. region c:1-124 [130774]
    11. 2csl
      automatically matched to 2CSL A:1-124
      1. region d:1-124 [130775]
    12. 2csl
      automatically matched to 2CSL A:1-124
      1. region e:1-124 [130776]
    13. 2csl
      automatically matched to 2CSL A:1-124
      1. region f:1-124 [130777]
11. Hypothetical protein SO1960 [160498]
  1. Shewanella oneidensis [TaxId: 70863] [160499] (3)
    SQ Q8EFL1 2-153
    1. 2otm
      complexed with act, ca, gol, na
      1. region a:2-153 [149012]
    2. 2otm
      automatically matched to 2OTM A:2-153
      complexed with act, ca, gol, na
      1. region b:2-153 [149013]
    3. 2otm
      automatically matched to 2OTM A:2-153
      complexed with act, ca, gol, na
      1. region c:3-153 [149014]
Chorismate mutase [55304] (3)
1. Chorismate mutase [55305]
  1. Bacillus subtilis [TaxId: 1423] [55306] (6)
    1. 1dbf
      complexed with gol, so4; mutant
      1. chain a [39761]
      2. chain b [39762]
      3. chain c [39763]
    2. 1fnj
      mutant
      1. chain a [39776]
    3. 2chs
      mutant
      1. chain a [39764]
      2. chain b [39765]
      3. chain c [39766]
      4. chain d [39767]
      5. chain e [39768]
      6. chain f [39769]
      7. chain g [39770]
      8. chain h [39771]
      9. chain i [39772]
      10. chain j [39773]
      11. chain k [39774]
      12. chain l [39775]
    4. 1fnk
      mutant
      1. chain a [39777]
    5. 1com
      complexed with pre; mutant
      1. chain a [39778]
      2. chain b [39779]
      3. chain c [39780]
      4. chain d [39781]
      5. chain e [39782]
      6. chain f [39783]
      7. chain g [39784]
      8. chain h [39785]
      9. chain i [39786]
      10. chain j [39787]
      11. chain k [39788]
      12. chain l [39789]
    6. 2cht
      complexed with bar; mutant
      1. chain a [39790]
      2. chain b [39791]
      3. chain c [39792]
      4. chain d [39793]
      5. chain e [39794]
      6. chain f [39795]
      7. chain g [39796]
      8. chain h [39797]
      9. chain i [39798]
      10. chain j [39799]
      11. chain k [39800]
      12. chain l [39801]
  2. Thermus thermophilus [TaxId: 274] [89981] (3)
    1. 1ufy
      complexed with cl, mes, mli; mutant
      1. chain a [88489]
    2. 1ui9
      complexed with gol, mes; mutant
      1. chain a [88496]
    3. 1ode
      mutant
      1. chain a [86846]
      2. chain b [86847]
      3. chain c [86848]
  3. Clostridium thermocellum [TaxId: 1515] [118025] (1)
    SQ Q5KXU6 5-114 # 53% sequence identity
    1. 1xho
      Structural genomics target; GI:67848919
      1. chain a [115301]
      2. chain b [115302]
      3. chain c [115303]