Superfamily: Alpha-L RNA-binding motif

common motif in otherwise different folds
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Alpha-L RNA-binding motif [55173]
   alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta
4. Superfamily: Alpha-L RNA-binding motif [55174]
   common motif in otherwise different folds
   uperfamily

Families:

1. Ribosomal protein S4 [55178] (3)
   has a RRF/tRNA synthetase additional domain-like fold
   1. Ribosomal protein S4 [55179]
      also contains a Zn-binding N-terminal subdomain
      1. Thermus thermophilus [TaxId: 274] [55180] (45)
      2. Bacillus stearothermophilus [TaxId: 1422] [55181] (2)
      3. Escherichia coli [TaxId: 562] [160439] (26)
         SQ P0A7V8 1-205
2. Heat shock protein 15 kD [55182] (1)
   there are additional C-terminal structures
   1. Heat shock protein 15 kD [55183]
      ribosome-binding protein
      1. Escherichia coli [TaxId: 562] [55184] (2)
3. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75465] (2)
   there are additional N-terminal structures
   1. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75466]
      1. Thermus thermophilus [TaxId: 274] [82701] (2)
      2. Bacillus stearothermophilus [TaxId: 1422] [75467] (1)
4. YbcJ-like [103046] (1)
   overall topological similarity to the TyrRS C-domain
   1. Hypothetical protein YbcJ [103047]
      1. Escherichia coli [TaxId: 562] [103048] (1)
5. Pseudouridine synthase RsuA N-terminal domain [75468] (2)
   1. Pseudouridine synthase RsuA N-terminal domain [75469]
      1. Escherichia coli [TaxId: 562] [75470] (3)
      2. Haemophilus influenzae [TaxId: 727] [103049] (1)

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk