Structural Classification of Proteins
home mail help root up expand collapse

Fold: Lesion bypass DNA polymerase (Y-family), little finger domain

beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Lesion bypass DNA polymerase (Y-family), little finger domain [100878]
    beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology

Superfamilies:

  1. Lesion bypass DNA polymerase (Y-family), little finger domain [100879] (1)
    link to SUPERFAMILY database - Superfamily
    1. Lesion bypass DNA polymerase (Y-family), little finger domain [100880] (7)
      1. DinB homolog (DBH) [100881]
        1. Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287] [100882] (62)
          1. 1jx4 picpicxref
            complexed with adi, ca, mg
            1. region a:241-341 [90378] picpiclink
          2. 1s9f picpicxrefxrefxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddy, mg
            1. region a:241-341 [118913] picpiclink
          3. 1s9f picpicxrefxrefxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddy, mg
            1. region b:241-341 [118915] picpiclink
          4. 1s9f picpicxrefxrefxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddy, mg
            1. region c:241-341 [118917] picpiclink
          5. 1s9f picpicxrefxrefxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddy, mg
            1. region d:241-341 [118919] picpiclink
          6. 2jej picpicxref
            automatically matched to d1n48a1
            complexed with bzg, ca, dgt
            1. region a:241-341 [138284] picpiclink
          7. 1rys picpicxref
            complexed with atp, ca, edo, na
            1. region a:241-341 [98111] picpiclink
            2. region b:241-341 [98113] picpiclink
          8. 2asd picpicxrefxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dcp, ddg
            1. region a:241-341 [127248] picpiclink
          9. 2asd picpicxrefxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dcp, ddg
            1. region b:1241-1341 [127250] picpiclink
          10. 2rdi picpicxref
            automatically matched to d1n48a1
            complexed with gol, peg
            1. region a:241-341 [151928] picpiclink
          11. 1s10 picpicxref
            complexed with ca, dcp
            1. region a:241-341 [98327] picpiclink
          12. 1s0o picpicxref
            complexed with ca, mg, ttp
            1. region a:241-341 [98296] picpiclink
            2. region b:241-341 [98298] picpiclink
          13. 2imw picpicxref
            automatically matched to d1n48a1
            complexed with ca, dad, edo
            1. region p:241-341 [137519] picpiclink
          14. 2agq picpicxref
            automatically matched to d1n48a1
            complexed with ca, doc, dtp, mg
            1. region a:241-341 [126735] picpiclink
          15. 2bq3 picpicxref
            automatically matched to d1n48a1
            complexed with ca, gne
            1. region a:241-341 [128959] picpiclink
          16. 2uvv picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dgt; mutant
            1. region a:241-342 [139984] picpiclink
          17. 2br0 picpicxref
            automatically matched to d1n48a1
            complexed with ca, dg3, gne
            1. region a:241-341 [128973] picpiclink
          18. 1jxl picpicxref
            complexed with bro, ca, dg3, edo, mg
            1. region a:241-341 [90380] picpiclink
          19. 1n48 picpicxref
            complexed with 3dr, atp, ca
            1. region a:241-342 [91615] picpiclink
          20. 2uvw picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dgt; mutant
            1. region a:241-342 [139986] picpiclink
          21. 2rdj picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, gol, tmp
            1. region a:241-341 [151930] picpiclink
          22. 2rdj picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, gol, tmp
            1. region b:241-341 [151932] picpiclink
          23. 2jef picpicxref
            automatically matched to d1n48a1
            complexed with bzg, ca, dgt, doc
            1. region a:241-341 [138278] picpiclink
          24. 2c28 picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dg3
            1. region a:241-341 [129660] picpiclink
          25. 2jeg picpicxref
            automatically matched to d1n48a1
            complexed with bzg, ca, dgt, doc
            1. region a:241-341 [138280] picpiclink
          26. 2ibk picpicxref
            automatically matched to d1n48a1
            complexed with bap, ca, edo, gol, pop
            1. region a:241-341 [147598] picpiclink
          27. 1ryr picpicxref
            complexed with atp, ca
            1. region a:241-341 [98109] picpiclink
          28. 2bqr picpicxref
            automatically matched to d1n48a1
            complexed with ca, dtp, gne
            1. region a:241-341 [128965] picpiclink
          29. 1s97 picpicxref
            complexed with ca, dct
            1. region a:241-341 [98742] picpiclink
            2. region b:241-341 [98744] picpiclink
            3. region c:241-341 [98746] picpiclink
            4. region d:241-341 [98748] picpiclink
          30. 2j6u picpicxref
            automatically matched to d1n48a1
            complexed with 6og, ca, dgt
            1. region a:244-344 [138093] picpiclink
          31. 1n56 picpicxref
            complexed with 3dr, atp, ca, mg
            1. region a:241-341 [91680] picpiclink
            2. region b:241-341 [91682] picpiclink
          32. 2r8i picpicxref
            automatically matched to d1n48a1
            complexed with ca, dtp, p; mutant
            1. region a:241-341 [151721] picpiclink
          33. 2bqu picpicxref
            automatically matched to d1n48a1
            complexed with ca, dad, gne
            1. region a:241-341 [128967] picpiclink
          34. 2jei picpicxref
            automatically matched to d1n48a1
            complexed with bzg, ca, dgt
            1. region a:241-341 [138282] picpiclink
          35. 1s0m picpicxref
            complexed with atp, bpa, ca, mg
            1. region a:241-341 [98290] picpiclink
            2. region b:241-341 [98292] picpiclink
          36. 2r8h picpicxref
            automatically matched to d1n48a1
            complexed with ca, dgt, p; mutant
            1. region a:241-341 [151719] picpiclink
          37. 2j6s picpicxref
            automatically matched to d1n48a1
            complexed with 6og, ca, dtp
            1. region a:241-342 [138089] picpiclink
          38. 2c22 picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dgt
            1. region a:241-341 [129655] picpiclink
          39. 2agp picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dgt, doc, mg
            1. region a:241-341 [126731] picpiclink
          40. 2agp picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dgt, doc, mg
            1. region b:241-341 [126733] picpiclink
          41. 2j6t picpicxref
            automatically matched to d1n48a1
            complexed with 6og, ca, dtp
            1. region a:241-341 [138091] picpiclink
          42. 2r8g picpicxref
            automatically matched to d1n48a1
            complexed with ca, dgt, p; mutant
            1. region a:241-341 [151717] picpiclink
          43. 2ago picpicxref
            automatically matched to d1n48a1
            complexed with ca, mg, pop
            1. region a:241-341 [126729] picpiclink
          44. 2asj picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddg
            1. region a:241-341 [127254] picpiclink
          45. 2asj picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddg
            1. region b:1241-1341 [127256] picpiclink
          46. 2c2d picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dtp
            1. region a:241-341 [129664] picpiclink
          47. 2uvu picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dgt; mutant
            1. region a:241-342 [139982] picpiclink
          48. 1s0n picpicxref
            complexed with ca, dcp
            1. region a:241-341 [98294] picpiclink
          49. 2va2 picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dct, dft
            1. region a:241-342 [152815] picpiclink
          50. 2va2 picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dct, dft
            1. region b:241-342 [152817] picpiclink
          51. 2asl picpicxrefxref
            automatically matched to d1n48a1
            complexed with 8og, ca, doc
            1. region a:241-341 [127258] picpiclink
          52. 2asl picpicxrefxref
            automatically matched to d1n48a1
            complexed with 8og, ca, doc
            1. region b:1241-1341 [127260] picpiclink
          53. 2atl picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dcp, ddg
            1. region a:241-341 [127296] picpiclink
          54. 2atl picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dcp, ddg
            1. region b:1241-1341 [127298] picpiclink
          55. 2c2r picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dct, doc
            1. region a:241-341 [129680] picpiclink
          56. 2uvr picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dgt; mutant
            1. region a:241-342 [139980] picpiclink
          57. 2va3 picpicxref
            automatically matched to d1n48a1
            complexed with ca, dft, dgt
            1. region a:241-342 [152819] picpiclink
          58. 2c2e picpicxref
            automatically matched to d1n48a1
            complexed with 8og, ca, dcp
            1. region a:241-341 [129666] picpiclink
          59. 2v9w picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dct, dft
            1. region a:241-342 [152811] picpiclink
          60. 2v9w picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, dct, dft
            1. region b:241-342 [152813] picpiclink
          61. 2au0 picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddg
            1. region a:241-341 [127318] picpiclink
          62. 2au0 picpicxrefxref
            automatically matched to d1n48a1
            complexed with ca, ddg
            1. region b:1241-1341 [127320] picpiclink
        2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [100883] (2)
          1. 1k1s picpicxref
            mutant
            1. region a:240-344 [90386] picpiclink
          2. 1k1q picpicxref
            mutant
            1. region a:240-344 [90382] picpiclink
            2. region b:240-344 [90384] picpiclink
        3. Sulfolobus acidocaldarius Brock et al. 1972 (Sulfolobus acidocaldarius) [TaxId: 2285] [160394] (3)
          1. 3bq1 picpicxref
            automatically matched to d1k1qa1
            complexed with ca, dg3
            1. region a:240-344 [155493] picpiclink
          2. 3bq0 picpicxref
            automatically matched to d1k1qa1
            complexed with ca
            1. region a:240-344 [155491] picpiclink
          3. 3bq2 picpicxref
            automatically matched to d1k1qa1
            complexed with ca
            1. region a:240-344 [155495] picpiclink
      2. DNA polymerase eta [100884]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [100885] (5)
          1. 1jih picpicxref
            1. region a:390-509 [90374] picpiclink
            2. region b:390-509 [90376] picpiclink
          2. 2r8j picpicxrefxref
            automatically matched to d1jiha1
            complexed with ca, cpt, dcp
            1. region a:390-509 [151723] picpiclink
          3. 2r8j picpicxrefxref
            automatically matched to d1jiha1
            complexed with ca, cpt, dcp
            1. region b:390-509 [151725] picpiclink
          4. 2r8k picpicxrefxref
            automatically matched to d1jiha1
            complexed with 2oa, ca, cpt
            1. region a:390-509 [151727] picpiclink
          5. 2r8k picpicxrefxref
            automatically matched to d1jiha1
            complexed with 2oa, ca, cpt
            1. region b:390-509 [151729] picpiclink
      3. DNA polymerase IV [103036]
        1. Escherichia coli [TaxId: 562] [103037] (1)
          1. 1unn picpicxref
            little finger domain only complexed with DNA polymerase III beta subunit
            complexed with so4
            1. chain c [99680] picpiclink
            2. chain d [99681] picpiclink
      4. DNA polymerase iota [111015]
        1. Human (Homo sapiens) [TaxId: 9606] [111016] (8)
          SQ Q9UNA4
          1. 1zet picpicxref
            automatically matched to d1t3na1
            complexed with bru, doc, mg, ttp
            1. region a:300-414 [124997] picpiclink
          2. 2dpi picpicxref
            automatically matched to d1t3na1
            complexed with dcp, doc, eda, mg
            1. region a:300-414 [131612] picpiclink
          3. 2dpj picpicxref
            automatically matched to d1t3na1
            complexed with doc, eda, mg, ttp
            1. region a:300-414 [131614] picpiclink
          4. 2flp picpicxref
            automatically matched to d1t3na1
            complexed with doc
            1. region a:300-414 [133745] picpiclink
          5. 1t3n picpicxref
            complexed with doc, mg, ttp
            1. region a:300-414 [106363] picpiclink
            2. region b:720-834 [106365] picpiclink
          6. 2alz picpicxref
            automatically matched to d1t3na1
            complexed with dcp, doc, mg
            1. region a:300-414 [126994] picpiclink
          7. 2fln picpicxref
            automatically matched to d1t3na1
            complexed with doc
            1. region a:300-414 [133731] picpiclink
          8. 2fll picpicxref
            automatically matched to d1t3na1
            complexed with doc, mg, ttp
            1. region a:300-414 [133727] picpiclink
      5. DNA polymerase kappa [111017]
        1. Human (Homo sapiens) [TaxId: 9606] [111018] (1)
          SQ Q9UBT6 71-517
          1. 1t94 picpicxref
            1. region a:411-515 [106701] picpiclink
            2. region b:413-515 [106703] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk