Structural Classification of Proteins
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Superfamily: DNA-binding domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: DNA-binding domain [54170]
    beta(3)-alpha; 2 layers: alpha/beta
  4. Superfamily: DNA-binding domain [54171]
    link to SUPERFAMILY database - Superfamily

Families:

  1. DNA-binding domain from tn916 integrase [54172] (1)
    1. DNA-binding domain from tn916 integrase [54173]
      1. Enterococcus faecalis [TaxId: 1351] [54174] (4)
        1. 1bb8 picpic
          1. chain a [37478] picpiclink
        2. 2bb8 picpic
          1. chain a [37480] picpiclink
        3. 1tn9 picpic
          protein/DNA complex; mutant
          1. chain a [37481] picpiclink
        4. 1b69 picpic
          protein/DNA complex; mutant
          1. chain a [37479] picpiclink
  2. lambda integrase N-terminal domain [75344] (1)
    1. lambda integrase N-terminal domain [75345]
      1. Bacteriophage lambda [TaxId: 10710] [75346] (7)
        1. 1z1b picpicxrefxref
          automatically matched to d1kjka_
          mutant
          1. region a:11-59 [124346] picpiclink
        2. 1z1b picpicxrefxref
          automatically matched to d1kjka_
          mutant
          1. region b:11-59 [124348] picpiclink
        3. 1kjk picpic
          1. chain a [72613] picpiclink
        4. 1z1g picpicxrefxrefxrefxref
          automatically matched to d1kjka_
          mutant
          1. region a:11-59 [124353] picpiclink
        5. 1z1g picpicxrefxrefxrefxref
          automatically matched to d1kjka_
          mutant
          1. region b:11-59 [124355] picpiclink
        6. 1z1g picpicxrefxrefxrefxref
          automatically matched to d1kjka_
          mutant
          1. region c:11-59 [124357] picpiclink
        7. 1z1g picpicxrefxrefxrefxref
          automatically matched to d1kjka_
          mutant
          1. region d:11-59 [124359] picpiclink
  3. GCC-box binding domain [54175] (1)
    1. GCC-box binding domain [54176]
      1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [54177] (3)
        1. 1gcc picpic
          protein/DNA complex
          1. chain a [37482] picpiclink
        2. 3gcc picpic
          1. chain a [37483] picpiclink
        3. 2gcc picpic
          1. chain a [37484] picpiclink
  4. Methyl-CpG-binding domain, MBD [54178] (3)
    1. Methyl-CpG-binding protein 2, MECP2 [54179]
      1. Human (Homo sapiens) [TaxId: 9606] [54180] (1)
        1. 1qk9 picpic
          1. chain a [37485] picpiclink
      2. Chicken (Gallus gallus) [TaxId: 9031] [102734] (1)
        1. 1ub1 picpic
          1. chain a [99140] picpiclink
    2. Methylation-dependent transcriptional repressor MBD1/PCM1 [54181]
      1. Human (Homo sapiens) [TaxId: 9606] [54182] (2)
        1. 1ig4 picpic
          complex with methylated DNA
          complexed with ch3
          1. chain a [62362] picpiclink
        2. 1d9n picpic
          1. chain a [37486] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk