Structural Classification of Proteins

Superfamily: Nucleoside diphosphate kinase, NDK

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily: Nucleoside diphosphate kinase, NDK [54919]
uperfamily

Families:

Nucleoside diphosphate kinase, NDK [54920] (20)
1. Nucleoside diphosphate kinase, NDK [54921]
  1. Human (Homo sapiens) [TaxId: 9606] [54922] (14)
    1. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region a:2-151 [155055]
    2. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region b:2-151 [155056]
    3. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region c:5-151 [155057]
    4. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region d:2-151 [155058]
    5. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region e:5-151 [155059]
    6. 3bbb
      automatically matched to d1nskl_
      complexed with da, dg
      1. region f:2-151 [155060]
    7. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region a:2-151 [155065]
    8. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region b:2-151 [155066]
    9. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region c:2-151 [155067]
    10. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region d:2-151 [155068]
    11. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region e:2-151 [155069]
    12. 3bbf
      automatically matched to d1nskl_
      complexed with dtt, gdp, mg
      1. region f:2-151 [155070]
    13. 1nue
      complexed with gdp, mg
      1. chain a [39076]
      2. chain b [39077]
      3. chain c [39078]
      4. chain d [39079]
      5. chain e [39080]
      6. chain f [39081]
    14. 1nsk
      CASP1
      1. chain r [39082]
      2. chain l [39083]
      3. chain t [39084]
      4. chain u [39085]
      5. chain n [39086]
      6. chain o [39087]
  2. Human (Homo sapiens), NDK4 [TaxId: 9606] [54923] (1)
    1. 1ehw
      complexed with so4; mutant
      1. chain a [39088]
      2. chain b [39089]
  3. Human (Homo sapiens), NDKA [TaxId: 9606] [75437] (5)
    1. 1ucn
      complexed with adp, ca, po4, trs; mutant
      1. chain a [99183]
      2. chain b [99184]
      3. chain c [99185]
    2. 1jxv
      1. chain a [71932]
      2. chain b [71933]
      3. chain c [71934]
      4. chain d [71935]
      5. chain e [71936]
      6. chain f [71937]
    3. 2hvd
      automatically matched to d1jxva_
      complexed with adp
      1. region a:4-152 [136801]
    4. 2hvd
      automatically matched to d1jxva_
      complexed with adp
      1. region b:4-152 [136802]
    5. 2hvd
      automatically matched to d1jxva_
      complexed with adp
      1. region c:4-152 [136803]
  4. Cow (Bos taurus) [TaxId: 9913] [54924] (2)
    1. 1be4
      complexed with pcg
      1. chain a [39090]
      2. chain b [39091]
      3. chain c [39092]
    2. 1bhn
      complexed with 35g, gdp
      1. chain a [39093]
      2. chain b [39094]
      3. chain c [39095]
      4. chain d [39096]
      5. chain e [39097]
      6. chain f [39098]
  5. Dictyostelium discoideum [TaxId: 44689] [54925] (27)
    1. 1hlw
      mutant
      1. chain a [39100]
    2. 1ndc
      complexed with mg, tyd
      1. chain a [39104]
    3. 1npk
      1. chain a [39099]
    4. 1f3f
      complexed with d4d, d4t, mg, po4; mutant
      1. chain a [39101]
      2. chain b [39102]
      3. chain c [39103]
    5. 1kdn
      complexed with adp, af3, mg
      1. chain a [39105]
      2. chain b [39106]
      3. chain c [39107]
    6. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region a:6-155 [118868]
    7. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region b:6-155 [118869]
    8. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region c:6-155 [118870]
    9. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region d:6-155 [118871]
    10. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region e:6-155 [118872]
    11. 1s5z
      automatically matched to d1f6tb_
      complexed with po4, son
      1. region f:6-155 [118873]
    12. 1ncl
      mutant
      1. chain a [39109]
    13. 1nsp
      complexed with phs
      1. chain a [39108]
    14. 1f6t
      complexed with mg, tbd
      1. chain a [39110]
      2. chain b [39111]
      3. chain c [39112]
    15. 1hhq
      complexed with so4; mutant
      1. chain a [61044]
    16. 1ndp
      complexed with adp, mg
      1. chain a [39113]
      2. chain b [39114]
    17. 2bef
      complexed with adp, bef, mg
      1. chain a [39115]
      2. chain b [39116]
      3. chain c [39117]
    18. 1mn7
      complexed with abt, mg; mutant
      1. chain a [79316]
      2. chain b [79317]
    19. 1lwx
      complexed with azd, mg; mutant
      1. chain a [39119]
      2. chain b [39120]
      3. chain c [39121]
    20. 1ndk
      mutant
      1. chain a [39118]
    21. 1b4s
      complexed with adp, mg, po4; mutant
      1. chain a [39122]
      2. chain b [39123]
      3. chain c [39124]
    22. 1leo
      mutant
      1. chain a [39125]
    23. 1b99
      complexed with fup, pop
      1. chain a [39126]
      2. chain b [39127]
      3. chain c [39128]
      4. chain d [39129]
      5. chain e [39130]
      6. chain f [39131]
    24. 1mn9
      complexed with mg, rtp; mutant
      1. chain a [85025]
      2. chain b [85026]
      3. chain c [85027]
    25. 1hiy
      complexed with 3an
      1. chain a [61068]
      2. chain b [61069]
      3. chain c [61070]
    26. 1pae
      complexed with cse, se; mutant
      1. chain x [94412]
    27. 1bux
      complexed with pps
      1. chain a [39132]
      2. chain b [39133]
      3. chain c [39134]
  6. Drosophila melanogaster [TaxId: 7227] [54926] (2)
    1. 1nsq
      complexed with phs
      1. chain a [39135]
      2. chain b [39136]
      3. chain c [39137]
    2. 1ndl
      1. chain a [39138]
      2. chain b [39139]
      3. chain c [39140]
  7. Myxococcus xanthus [TaxId: 34] [54927] (3)
    1. 1nhk
      complexed with cmp
      1. chain r [39141]
      2. chain l [39142]
    2. 2nck
      1. chain r [39143]
      2. chain l [39144]
    3. 1nlk
      complexed with adp, mg
      1. chain r [39145]
      2. chain l [39146]
  8. Mycobacterium tuberculosis [TaxId: 1773] [75438] (1)
    1. 1k44
      1. chain a [72033]
      2. chain b [72034]
      3. chain c [72035]
      4. chain d [72036]
      5. chain e [72037]
      6. chain f [72038]
  9. Bacillus halodenitrificans [TaxId: 1482] [89937] (1)
    1. 1nb2
      1. chain a [85508]
  10. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117947] (1)
    SQ Q8ID43
    1. 1xiq
      1. chain a [115361]
      2. chain b [115362]
      3. chain c [115363]
      4. chain d [115364]
      5. chain e [115365]
      6. chain f [115366]
  11. Pea (Pisum sativum) [TaxId: 3888] [117948] (1)
    SQ Q9SP13 81-231
    1. 1w7w
      mutant
      1. chain a [114327]
      2. chain b [114328]
      3. chain c [114329]
      4. chain d [114330]
      5. chain e [114331]
      6. chain f [114332]
  12. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117949] (1)
    SQ P39207
    1. 1u8w
      1. chain a [113204]
      2. chain b [113205]
      3. chain c [113206]
      4. chain d [113207]
      5. chain e [113208]
      6. chain f [113209]
  13. Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702] [117950] (2)
    SQ O64903 79-231
    1. 1s57
      complexed with epe, so4
      1. chain a [112028]
      2. chain b [112029]
      3. chain c [112030]
      4. chain d [112031]
      5. chain e [112032]
      6. chain f [112033]
    2. 1s59
      complexed with dgi, dgt
      1. chain a [112034]
      2. chain b [112035]
      3. chain c [112036]
      4. chain d [112037]
      5. chain e [112038]
      6. chain f [112039]
  14. Human(Homo sapiens), NDK3 [TaxId: 9606] [143283] (3)
    SQ Q13232 18-169
    1. 1zs6
      complexed with adp
      1. region a:18-169 [125590]
    2. 1zs6
      automatically matched to 1ZS6 A:18-169
      complexed with adp
      1. region b:18-169 [125591]
    3. 1zs6
      automatically matched to 1ZS6 A:18-169
      complexed with adp
      1. region d:18-169 [125592]
  15. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143284] (12)
    SQ O58429 3-155
    1. 2dya
      automatically matched to 2CWK A:6-158
      complexed with adp, cl, mg
      1. region a:6-158 [131895]
    2. 2dya
      automatically matched to 2CWK A:6-158
      complexed with adp, cl, mg
      1. region b:6-158 [131896]
    3. 2dxe
      automatically matched to 2CWK A:6-158
      complexed with cl, gdp, mg
      1. region a:6-158 [131870]
    4. 2dxe
      automatically matched to 2CWK A:6-158
      complexed with cl, gdp, mg
      1. region b:6-158 [131871]
    5. 2dxd
      automatically matched to 2CWK A:6-158
      complexed with anp, cl
      1. region a:6-158 [131868]
    6. 2dxd
      automatically matched to 2CWK A:6-158
      complexed with anp, cl
      1. region b:6-158 [131869]
    7. 2dxf
      automatically matched to 2CWK A:6-158
      complexed with cl, gnp
      1. region a:6-158 [131872]
    8. 2dxf
      automatically matched to 2CWK A:6-158
      complexed with cl, gnp
      1. region b:6-158 [131873]
    9. 2cwk
      1. region a:6-158 [130925]
    10. 2cwk
      automatically matched to 2CWK A:6-158
      1. region b:6-157 [130926]
    11. 2dy9
      automatically matched to 2CWK A:6-158
      complexed with adp, cl, mg
      1. region a:6-158 [131893]
    12. 2dy9
      automatically matched to 2CWK A:6-158
      complexed with adp, cl, mg
      1. region b:6-158 [131894]
  16. Rice(Oryza sativa) [TaxId: 4530] [143285] (12)
    SQ Q07661 1-148
    1. 1pku
      1. region a:4-151 [118718]
    2. 1pku
      automatically matched to 1PKU A:4-151
      1. region b:4-151 [118719]
    3. 1pku
      automatically matched to 1PKU A:4-151
      1. region c:4-151 [118720]
    4. 1pku
      automatically matched to 1PKU A:4-151
      1. region d:4-151 [118721]
    5. 1pku
      automatically matched to 1PKU A:4-151
      1. region e:4-151 [118722]
    6. 1pku
      automatically matched to 1PKU A:4-151
      1. region f:4-151 [118723]
    7. 1pku
      automatically matched to 1PKU A:4-151
      1. region g:4-151 [118724]
    8. 1pku
      automatically matched to 1PKU A:4-151
      1. region h:4-151 [118725]
    9. 1pku
      automatically matched to 1PKU A:4-151
      1. region i:4-151 [118726]
    10. 1pku
      automatically matched to 1PKU A:4-151
      1. region j:4-151 [118727]
    11. 1pku
      automatically matched to 1PKU A:4-151
      1. region k:4-151 [118728]
    12. 1pku
      automatically matched to 1PKU A:4-151
      1. region l:4-151 [118729]
  17. Mimivirus [TaxId: 315393] [143286] (8)
    SQ Q5UQL3 2-137
    1. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region a:2-129 [128103]
    2. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region b:2-129 [128104]
    3. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region c:2-129 [128105]
    4. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region d:2-129 [128106]
    5. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region e:2-129 [128107]
    6. 2b8q
      automatically matched to 2B8P A:2-129
      complexed with mg, po4, tyd
      1. region f:2-129 [128108]
    7. 2b8p
      complexed with so4
      1. region a:2-129 [128101]
    8. 2b8p
      automatically matched to 2B8P A:2-129
      complexed with so4
      1. region b:2-129 [128102]
  18. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [143287] (3)
    SQ Q8ZWY4 2-183
    1. 1xqi
      complexed with pge, trs; mutant
      1. region a:14-195 [122237]
    2. 1xqi
      automatically matched to 1XQI A:14-195
      complexed with pge, trs; mutant
      1. region b:14-195 [122238]
    3. 1xqi
      automatically matched to 1XQI A:14-195
      complexed with pge, trs; mutant
      1. region c:14-195 [122239]
  19. Archaeon Halobacterium salinarum [TaxId: 2242] [143288] (15)
    SQ P61136 4-158
    1. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region a:4-155 [127588]
    2. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region b:5-155 [127589]
    3. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region c:4-156 [127590]
    4. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region d:4-155 [127591]
    5. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region e:4-155 [127592]
    6. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region f:4-155 [127593]
    7. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region g:4-155 [127594]
    8. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region h:4-155 [127595]
    9. 2az3
      automatically matched to 2AZ1 A:4-158
      complexed with cdp, mg
      1. region i:5-155 [127596]
    10. 2az1
      complexed with ca
      1. region a:4-158 [127580]
    11. 2az1
      automatically matched to 2AZ1 A:4-158
      complexed with ca
      1. region b:4-158 [127581]
    12. 2az1
      automatically matched to 2AZ1 A:4-158
      complexed with ca
      1. region c:4-158 [127582]
    13. 2az1
      automatically matched to 2AZ1 A:4-158
      complexed with ca
      1. region d:4-158 [127583]
    14. 2az1
      automatically matched to 2AZ1 A:4-158
      complexed with ca
      1. region e:5-158 [127584]
    15. 2az1
      automatically matched to 2AZ1 A:4-158
      complexed with ca
      1. region f:4-158 [127585]
  20. Thermus thermophilus [TaxId: 274] [143289] (6)
    SQ Q5SLV5 1-137
    1. 1wkj
      1. region a:1-137 [120983]
    2. 1wkj
      automatically matched to 1WKJ A:1-137
      1. region b:1-137 [120984]
    3. 1wkl
      automatically matched to 1WKJ A:1-137
      complexed with adp, atp, mg, phs
      1. region a:1-137 [120987]
    4. 1wkl
      automatically matched to 1WKJ A:1-137
      complexed with adp, atp, mg, phs
      1. region b:1-137 [120988]
    5. 1wkk
      automatically matched to 1WKJ A:1-137
      complexed with gdp
      1. region a:1-137 [120985]
    6. 1wkk
      automatically matched to 1WKJ A:1-137
      complexed with gdp
      1. region b:1-137 [120986]