Structural Classification of Proteins
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Family: Bacterial exopeptidase dimerisation domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: Bacterial exopeptidase dimerisation domain [55031]
    link to SUPERFAMILY database - Superfamily
  5. Family: Bacterial exopeptidase dimerisation domain [55032]

Protein Domains:

  1. Carboxypeptidase G2 [55033]
    dimerisation mode is similar to that of 1PSD domain
    1. Pseudomonas sp., strain rs-16 [TaxId: 306] [55034] (1)
      1. 1cg2 picpicxref
        complexed with zn
        1. region a:214-326 [39360] picpiclink
        2. region b:214-326 [39361] picpiclink
        3. region c:214-326 [39362] picpiclink
        4. region d:214-326 [39363] picpiclink
  2. Peptidase T (tripeptidase) [75443]
    1. Salmonella typhimurium [TaxId: 90371] [75444] (1)
      1. 1fno picpicxref
        complexed with mse, so4, zn2
        1. region a:208-320 [70145] picpiclink
    2. Escherichia coli [TaxId: 562] [103002] (1)
      1. 1vix picpicxref
        structural genomics
        complexed with so4, zn
        1. region a:208-320 [100778] picpiclink
        2. region b:208-320 [100780] picpiclink
  3. Peptidase-like beta-alanine synthase [103003]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [103004] (2)
      1. 1r3n picpicxref
        complexed with bib, zn
        1. region a:248-363 [96946] picpiclink
        2. region b:248-363 [96948] picpiclink
        3. region c:248-363 [96950] picpiclink
        4. region d:248-363 [96952] picpiclink
        5. region e:248-363 [96954] picpiclink
        6. region f:248-363 [96956] picpiclink
        7. region g:248-363 [96958] picpiclink
        8. region h:248-363 [96960] picpiclink
      2. 1r43 picpicxref
        complexed with bib, dtt, trs, zn
        1. region a:248-363 [96970] picpiclink
        2. region b:248-363 [96972] picpiclink
  4. Succinyl-diaminopimelate desuccinylase [103005]
    1. Neisseria meningitidis [TaxId: 487] [103006] (1)
      1. 1vgy picpicxref
        structural genomics
        mutant
        1. region a:181-293 [100621] picpiclink
        2. region b:181-293 [100623] picpiclink
  5. IAA-amino acid hydrolase [117979]
    apparently monomeric
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117980] (2)
      SQ P54970 37-428
      1. 1xmb picpicxref
        structural genomics target
        1. region a:216-334 [115480] picpiclink
      2. 2q43 picpicxref
        automatically matched to d1xmba2
        1. region a:195-313 [139822] picpiclink
  6. Aminopeptidase PepV [82685]
    contains insert sudbomain 205-292 mimicking the other half of the family-specific dimer
    1. Lactobacillus delbrueckii [TaxId: 1584] [82686] (1)
      1. 1lfw picpicxref
        complexed with aep, zn
        1. region a:187-382 [77943] picpiclink
  7. Allantoate amidohydrolase AllC [143401]
    1. Escherichia coli [TaxId: 562] [143402] (4)
      SQ P77425 211-327
      1. 1z2l picpicxrefxref
        complexed with 1al, so4, zn
        1. region a:213-329 [124384] picpiclink
      2. 1z2l picpicxrefxref
        automatically matched to 1Z2L A:213-329
        complexed with 1al, so4, zn
        1. region b:213-329 [124386] picpiclink
      3. 2imo picpicxrefxref
        automatically matched to 1Z2L A:213-329
        1. region a:213-329 [137516] picpiclink
      4. 2imo picpicxrefxref
        automatically matched to 1Z2L A:213-329
        1. region b:213-329 [137518] picpiclink
  8. Protein YxeP [143403]
    dimeric protein closely related to IAA-amino acid hydrolase
    1. Bacillus subtilis [TaxId: 1423] [143404] (2)
      SQ P54955 178-292
      1. 1ysj picpicxrefxref
        complexed with ni; mutant
        1. region a:178-292 [123976] picpiclink
      2. 1ysj picpicxrefxref
        automatically matched to 1YSJ A:178-292
        complexed with ni; mutant
        1. region b:178-292 [123978] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk