Structural Classification of Proteins

Superfamily: RuBisCO, large subunit, small (N-terminal) domain

: C-terminal domain is beta/alpha barrel
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily: RuBisCO, large subunit, small (N-terminal) domain [54966]
C-terminal domain is beta/alpha barrel
uperfamily

Families:

Ribulose 1,5-bisphosphate carboxylase-oxygenase [54967] (12)
1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [54968]
  1. Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097] [54969] (5)
    1. 3rub
      complexed with so4
      1. region l:22-147 [39232]
    2. 1ej7
      complexed with po4
      1. region l:18-147 [39233]
    3. 1rlc
      complexed with cap
      1. region l:22-147 [39236]
    4. 1rld
      1. region a:22-147 [39234]
      2. region b:22-147 [39235]
    5. 4rub
      complexed with cap, cbx, mg
      1. region a:9-147 [39237]
      2. region b:9-147 [39238]
      3. region c:9-147 [39239]
      4. region d:9-147 [39240]
  2. Spinach (Spinacia oleracea) [TaxId: 3562] [54970] (11)
    1. 8ruc
      complexed with cap, mg
      1. region a:9-147 [39245]
      2. region c:9-147 [39246]
      3. region e:9-147 [39247]
      4. region g:9-147 [39248]
    2. 1ir1
      complexed with cap, kcx, mg, mme
      1. region a:12-147 [71283]
      2. region b:12-147 [71285]
      3. region c:12-147 [71287]
      4. region d:12-147 [71289]
    3. 1rbo
      complexed with cap
      1. region l:9-147 [39249]
      2. region b:9-147 [39250]
      3. region e:9-147 [39251]
      4. region h:9-147 [39252]
    4. 1aa1
      complexed with 3pg, mg
      1. region l:21-147 [39253]
      2. region b:21-147 [39254]
      3. region e:21-147 [39255]
      4. region h:21-147 [39256]
    5. 1rxo
      complexed with ca, rub
      1. region l:9-147 [39257]
      2. region b:9-147 [39258]
      3. region e:9-147 [39259]
      4. region h:9-147 [39260]
    6. 1aus
      complexed with cbx, mg
      1. region l:20-147 [39261]
    7. 1aus
      duplicate of 1AUS L:20-147
      complexed with cbx, mg
      1. region m:20-147 [118410]
    8. 1aus
      duplicate of 1AUS L:20-147
      complexed with cbx, mg
      1. region n:20-147 [118412]
    9. 1aus
      duplicate of 1AUS L:20-147
      complexed with cbx, mg
      1. region o:20-147 [118414]
    10. 1rco
      complexed with xdp
      1. region l:9-147 [39262]
      2. region b:9-147 [39263]
      3. region e:9-147 [39264]
      4. region h:9-147 [39265]
      5. region k:9-147 [39266]
      6. region o:9-147 [39267]
      7. region r:9-147 [39268]
      8. region v:9-147 [39269]
    11. 1rcx
      complexed with rub
      1. region l:9-147 [39270]
      2. region b:9-147 [39271]
      3. region e:9-147 [39272]
      4. region h:9-147 [39273]
      5. region k:9-147 [39274]
      6. region o:9-147 [39275]
      7. region r:9-147 [39276]
      8. region v:9-147 [39277]
  3. Galdieria partita [TaxId: 83374] [54971] (2)
    1. 1bwv
      complexed with cap, mg
      1. region a:7-149 [39278]
      2. region c:7-149 [39279]
      3. region e:7-149 [39280]
      4. region g:7-149 [39281]
    2. 1iwa
      complexed with so4
      1. region a:6-149 [83727]
      2. region c:6-149 [83730]
      3. region e:6-149 [83733]
      4. region g:6-149 [83736]
      5. region i:6-149 [83739]
      6. region k:6-149 [83742]
      7. region m:6-149 [83745]
      8. region o:6-149 [83748]
  4. Chlamydomonas reinhardtii [TaxId: 3055] [69730] (74)
    1. 1gk8
      complexed with cap, egl, mg, mme
      1. region a:7-149 [65235]
      2. region c:7-149 [65237]
      3. region e:11-149 [65239]
      4. region g:9-149 [65241]
    2. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region a:9-149 [152693]
    3. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region b:9-149 [152695]
    4. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region c:9-149 [152697]
    5. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region d:10-149 [152699]
    6. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region e:11-149 [152701]
    7. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region f:11-149 [152703]
    8. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region g:11-149 [152705]
    9. 2v6a
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region h:9-149 [152707]
    10. 1ir2
      complexed with cap, cry, hyp, kcx, mg, mme, smc
      1. region a:8-149 [71303]
      2. region b:9-149 [71305]
      3. region c:10-149 [71307]
      4. region d:9-149 [71309]
      5. region e:11-149 [71311]
      6. region f:11-149 [71313]
      7. region g:10-149 [71315]
      8. region h:8-149 [71317]
      9. region s:11-149 [71327]
      10. region t:10-149 [71329]
      11. region u:7-149 [71331]
      12. region v:7-149 [71333]
      13. region w:10-149 [71335]
      14. region x:10-149 [71337]
      15. region y:11-149 [71339]
      16. region z:10-149 [71341]
    11. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region a:11-149 [119711]
    12. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region b:11-149 [119713]
    13. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region e:11-149 [119716]
    14. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region h:11-149 [119719]
    15. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region k:11-149 [119723]
    16. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region o:11-149 [119726]
    17. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region r:11-149 [119729]
    18. 1uw9
      automatically matched to d1gk8a2
      complexed with cap, edo, mg; mutant
      1. region v:11-149 [119732]
    19. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region a:10-149 [152621]
    20. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region b:10-149 [152623]
    21. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region c:10-149 [152625]
    22. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region d:11-149 [152627]
    23. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region e:11-149 [152629]
    24. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region f:10-149 [152631]
    25. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region g:10-149 [152633]
    26. 2v67
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region h:10-149 [152635]
    27. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region a:9-149 [152594]
    28. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region b:9-149 [152596]
    29. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region c:9-149 [152598]
    30. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region d:11-149 [152600]
    31. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region e:11-149 [152602]
    32. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region f:9-149 [152604]
    33. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region g:9-149 [152606]
    34. 2v63
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region h:9-149 [152608]
    35. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region a:11-149 [119791]
    36. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region b:11-149 [119793]
    37. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region e:11-149 [119795]
    38. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region h:11-149 [119797]
    39. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region k:11-149 [119799]
    40. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region o:11-149 [119801]
    41. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region r:11-149 [119803]
    42. 1uzh
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region v:11-149 [119805]
    43. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region a:10-149 [152645]
    44. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region b:10-149 [152647]
    45. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region c:10-149 [152649]
    46. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region d:11-149 [152651]
    47. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region e:10-149 [152653]
    48. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region f:10-149 [152655]
    49. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region g:10-149 [152657]
    50. 2v68
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region h:10-149 [152659]
    51. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region a:11-149 [119735]
    52. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region b:11-149 [119737]
    53. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region e:11-149 [119740]
    54. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region h:11-149 [119743]
    55. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region k:11-149 [119747]
    56. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region o:11-149 [119750]
    57. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region r:11-149 [119753]
    58. 1uwa
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, pyc; mutant
      1. region v:11-149 [119756]
    59. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region a:11-149 [119775]
    60. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region b:11-149 [119777]
    61. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region e:11-149 [119779]
    62. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region h:11-149 [119781]
    63. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region k:11-149 [119783]
    64. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region o:11-149 [119785]
    65. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region r:11-149 [119787]
    66. 1uzd
      automatically matched to d1gk8a2
      complexed with cap, edo, mg
      1. region v:11-149 [119789]
    67. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region a:11-149 [152669]
    68. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region b:11-149 [152671]
    69. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region c:12-149 [152673]
    70. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region d:11-149 [152675]
    71. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region e:11-149 [152677]
    72. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region f:11-149 [152679]
    73. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region g:11-149 [152681]
    74. 2v69
      automatically matched to d1gk8a2
      complexed with cap, edo, mg, mme; mutant
      1. region h:12-149 [152683]
  5. Alcaligenes eutrophus [TaxId: 106590] [54972] (1)
    1. 1bxn
      complexed with po4
      1. region a:22-150 [39282]
      2. region c:22-150 [39283]
      3. region e:22-150 [39284]
      4. region g:22-150 [39285]
  6. Synechococcus sp., strain pcc 6301 [TaxId: 1131] [54973] (16)
    1. 1rbl
      complexed with cap, cbx, mg
      1. region a:9-147 [39286]
    2. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region b:9-147 [118586]
    3. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region c:9-147 [118588]
    4. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region d:9-147 [118590]
    5. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region e:9-147 [118592]
    6. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region f:9-147 [118594]
    7. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region g:9-147 [118596]
    8. 1rbl
      duplicate of 1RBL A:9-147
      complexed with cap, cbx, mg
      1. region h:9-147 [118598]
    9. 1rsc
      complexed with xbp
      1. region a:9-147 [39287]
    10. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region b:9-147 [118607]
    11. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region c:9-147 [118609]
    12. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region d:9-147 [118611]
    13. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region e:9-147 [118613]
    14. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region f:9-147 [118615]
    15. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region g:9-147 [118617]
    16. 1rsc
      duplicate of 1RSC A:9-147
      complexed with xbp
      1. region h:9-147 [118619]
  7. Rhodospirillum rubrum [TaxId: 1085] [54974] (5)
    1. 5rub
      1. region a:2-137 [39288]
      2. region b:2-137 [39289]
    2. 2rus
      complexed with for, mg
      1. region a:2-137 [39290]
      2. region b:3-137 [39291]
    3. 1rus
      complexed with mp3
      1. region a:3-137 [39294]
      2. region b:3-137 [39295]
    4. 9rub
      complexed with cbx, mg, rub
      1. region a:2-137 [39292]
      2. region b:2-137 [39293]
    5. 1rba
      mutant
      1. region a:5-137 [39296]
      2. region b:5-137 [39297]
  8. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [69731] (1)
    1. 1geh
      complexed with so4
      1. region a:12-136 [65182]
      2. region b:12-136 [65184]
      3. region c:12-136 [65186]
      4. region d:12-136 [65188]
      5. region e:12-136 [65190]
  9. Chlorobium tepidum [TaxId: 1097] [117975] (3)
    SQ Q8KBL4 1-428
    1. 1ykw
      mutant
      1. region a:4-145 [123566]
    2. 1ykw
      automatically matched to 1YKW A:4-145
      mutant
      1. region b:4-145 [123568]
    3. 1tel
      1. region a:1001-1145 [112406]
      2. region b:2001-2145 [112408]
  10. Rice (Oryza sativa) [TaxId: 4530] [117976] (1)
    SQ P12089
    1. 1wdd
      complexed with cap, gol, mg, mme
      1. region a:11-150 [114529]
      2. region e:12-150 [114531]
  11. Archaeon Halothiobacillus neapolitanus [TaxId: 927] [143362] (1)
    SQ O85040 16-142
    1. 1svd
      complexed with gol, so4
      1. region a:16-142 [119058]
  12. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143363] (10)
    SQ O58677 8-133
    1. 2d69
      automatically matched to 2CWX A:8-133
      complexed with so4
      1. region a:8-133 [131293]
    2. 2d69
      automatically matched to 2CWX A:8-133
      complexed with so4
      1. region b:8-133 [131295]
    3. 2d69
      automatically matched to 2CWX A:8-133
      complexed with so4
      1. region d:8-133 [131297]
    4. 2d69
      automatically matched to 2CWX A:8-133
      complexed with so4
      1. region e:9-133 [131299]
    5. 2cwx
      1. region a:8-133 [130957]
    6. 2cwx
      automatically matched to 2CWX A:8-133
      1. region e:10-133 [130959]
    7. 2cxe
      automatically matched to 2CWX A:8-133
      1. region a:9-133 [130997]
    8. 2cxe
      automatically matched to 2CWX A:8-133
      1. region b:9-133 [130999]
    9. 2cxe
      automatically matched to 2CWX A:8-133
      1. region c:9-133 [131001]
    10. 2cxe
      automatically matched to 2CWX A:8-133
      1. region d:9-133 [131003]