Structural Classification of Proteins
home mail help root up expand collapse

Protein: Retroviral integrase, catalytic domain from Human immunodeficiency virus type 1 [TaxId: 11676]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: Retroviral integrase, catalytic domain [53107]
  6. Protein: Retroviral integrase, catalytic domain [53108]
  7. Species: Human immunodeficiency virus type 1 [TaxId: 11676] [53110]

PDB Entry Domains:

  1. 1exq picpic
    complexed with cd, cl, so4; mutant
    1. chain a [33646] picpiclink
    2. chain b [33647] picpiclink
  2. 1hyv picpic
    complexed with caf, cl, so4, tta; mutant
    1. chain a [61424] picpiclink
  3. 1b9d picpic
    complexed with cac, so4; mutant
    1. chain a [33649] picpiclink
  4. 1b9f picpic
    complexed with cac, so4; mutant
    1. chain a [33648] picpiclink
  5. 2b4j picpicxrefxref
    automatically matched to d1biza_
    complexed with gol, po4; mutant
    1. region a:57-208 [127833] picpiclink
  6. 2b4j picpicxrefxref
    automatically matched to d1biza_
    complexed with gol, po4; mutant
    1. region b:57-208 [127834] picpiclink
  7. 1b92 picpic
    complexed with cac, so4; mutant
    1. chain a [33654] picpiclink
  8. 1bis picpic
    mutant
    1. chain a [33650] picpiclink
    2. chain b [33651] picpiclink
  9. 1biz picpic
    complexed with cac; mutant
    1. chain a [33652] picpiclink
    2. chain b [33653] picpiclink
  10. 1bl3 picpic
    complexed with mg; mutant
    1. chain a [33655] picpiclink
    2. chain b [33656] picpiclink
    3. chain c [33657] picpiclink
  11. 1qs4 picpic
    1. chain a [33658] picpiclink
    2. chain b [33659] picpiclink
    3. chain c [33660] picpiclink
  12. 1itg picpic
    complexed with cac; mutant
    1. chain a [33661] picpiclink
  13. 1biu picpic
    complexed with mg; mutant
    1. chain a [33663] picpiclink
    2. chain b [33664] picpiclink
    3. chain c [33665] picpiclink
  14. 1hyz picpic
    complexed with caf, cl, so4, tto; mutant
    1. chain a [61426] picpiclink
  15. 1k6y picpicxref
    complexed with k, po4, zn; mutant
    1. region a:56-210 [68240] picpiclink
    2. region b:56-212 [68242] picpiclink
    3. region c:56-209 [68244] picpiclink
    4. region d:56-211 [68246] picpiclink
  16. 1bhl picpic
    complexed with cas; mutant
    1. chain a [33662] picpiclink
  17. 1bi4 picpic
    mutant
    1. chain a [33666] picpiclink
    2. chain b [33667] picpiclink
    3. chain c [33668] picpiclink
  18. 1ex4 picpicxref
    complexed with cps; mutant
    1. region a:56-222 [33670] picpiclink
    2. region b:55-222 [33671] picpiclink
  19. 2itg picpic
    mutant
    1. chain a [33669] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk