Structural Classification of Proteins
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Protein: Retroviral integrase, catalytic domain from Rous sarcoma virus RSV [TaxId: 11886]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: Retroviral integrase, catalytic domain [53107]
  6. Protein: Retroviral integrase, catalytic domain [53108]
  7. Species: Rous sarcoma virus RSV [TaxId: 11886] [53109]

PDB Entry Domains:

  1. 1cxq picpic
    complexed with epe, gol; mutant
    1. chain a [33621] picpiclink
  2. 1czb picpic
    complexed with epe; mutant
    1. chain a [33622] picpiclink
  3. 1cz9 picpic
    complexed with cit, sul; mutant
    1. chain a [33623] picpiclink
  4. 1cxu picpic
    complexed with cit, gol; mutant
    1. chain a [33624] picpiclink
  5. 1vsd picpic
    complexed with epe, mg, ohe
    1. chain a [33625] picpiclink
  6. 1asu picpic
    complexed with epe; mutant
    1. chain a [33626] picpiclink
  7. 1asw picpic
    complexed with epe, ipa; mutant
    1. chain a [33627] picpiclink
  8. 1a5x picpic
    complexed with y3
    1. chain a [33630] picpiclink
  9. 1a5v picpic
    complexed with mn, y3
    1. chain a [33629] picpiclink
  10. 1vsf picpic
    complexed with epe, mn
    1. chain a [33628] picpiclink
  11. 1a5w picpic
    complexed with y3
    1. chain a [33632] picpiclink
  12. 1vse picpic
    complexed with epe
    1. chain a [33631] picpiclink
  13. 1vsh picpic
    complexed with epe, ocy, zn
    1. chain a [33633] picpiclink
  14. 1vsm picpic
    1. chain a [33635] picpiclink
  15. 1asv picpic
    complexed with ohe; mutant
    1. chain a [33634] picpiclink
  16. 1vsj picpic
    complexed with cd, epe, ocy
    1. chain a [33636] picpiclink
  17. 1vsi picpic
    complexed with ca, epe, ocy
    1. chain a [33638] picpiclink
  18. 1vsl picpic
    complexed with zn2; mutant
    1. chain a [33637] picpiclink
  19. 1vsk picpic
    mutant
    1. chain a [33639] picpiclink
  20. 1c0m picpicxref
    mutant
    1. region a:49-216 [33640] picpiclink
    2. region b:54-216 [33641] picpiclink
    3. region c:49-216 [33642] picpiclink
    4. region d:54-216 [33643] picpiclink
  21. 1c1a picpicxref
    mutant
    1. region a:52-216 [33644] picpiclink
    2. region b:55-216 [33645] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk