Superfamily: Glycoside hydrolase/deacetylase

in the different families beta-barrels are similarly distorted but may vary in the number of strands
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: 7-stranded beta/alpha barrel [51988]
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
4. Superfamily: Glycoside hydrolase/deacetylase [88713]
   in the different families beta-barrels are similarly distorted but may vary in the number of strands
   uperfamily

Families:

1. 4-alpha-glucanotransferase, N-terminal domain [89554] (1)
   family 57 glycoside hydrolase; overall domain organization is similar to that of the alpha-mannosidase family
   1. 4-alpha-glucanotransferase, N-terminal domain [89555]
      1. Archaeon Thermococcus litoralis [TaxId: 2265] [89556] (3)
2. alpha-mannosidase [88714] (2)
   family 38 glycoside hydrolase; overall domain organization is similar to that of the 4-alpha-glucanotransferase family
   1. Golgi alpha-mannosidase II [88715]
      1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [88716] (46)
         SQ Q24451 94-1107
   2. Lysosomal alpha-mannosidase [89557]
      the single-chain precursor is processed into 5 peptides; heavily glycosylated
      1. Cow (Bos taurus) [TaxId: 9913] [89558] (1)
3. AmyC N-terminal domain-like [102189] (2)
   1. Hypothetical protein TT1467, N-terminal domain [102190]
      1. Thermus thermophilus [TaxId: 274] [102191] (1)
   2. Alpha-amylase AmyC [141951]
      1. Thermotoga maritima [TaxId: 2336] [141952] (1)
         SQ A1GKL6 1-404
4. NodB-like polysaccharide deacetylase [89559] (6)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456
   1. Probable polysaccharide deacetylase PdaA [89560]
      1. Bacillus subtilis [TaxId: 1423] [89561] (7)
   2. Chitin deacetylase [141953]
      1. Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576] [141954] (1)
         SQ Q6DWK3 29-248
   3. Xylanase XynA C-terminal domain [141955]
      1. Clostridium thermocellum [TaxId: 1515] [141956] (2)
         SQ O87119 480-683
   4. Putative polysaccharide deacetylase BA0424 [141957]
      1. Bacillus anthracis [TaxId: 1392] [141958] (1)
         SQ Q81Z49 54-258
   5. Peptidoglycan GlcNAc deacetylase C-terminal domain [141959]
      1. Streptococcus pneumoniae [TaxId: 1313] [141960] (2)
         SQ Q8DP63 268-463
   6. Acetyl-xylan esterase [141961]
      1. Streptomyces lividans [TaxId: 1916] [141962] (2)
         SQ Q54413 42-233
5. LamB/YcsF-like [117449] (3)
   Pfam 03746
   1. Hypothetical protein YbgL [117450]
      1. Escherichia coli [TaxId: 562] [117451] (1)
         SQ P75746
   2. Hypothetical protein PH0986 [117452]
      1. Pyrococcus horikoshii [TaxId: 53953] [117453] (1)
         SQ O58714
   3. Hypothetical protein TTHB195 [141963]
      1. Thermus thermophilus [TaxId: 274] [141964] (1)
         SQ Q53WG6 1-250
6. PA1517-like [141965] (1)
   seven-stranded barrel with a detectable sequence similarity to the six-stranded barrel NodB-like family; member of the same Pfam family (Pfam 01522)
   1. Hypothetical protein PA1517 [141966]
      1. Pseudomonas aeruginosa [TaxId: 287] [141967] (8)
         SQ Q9I3J6 4-304
7. Divergent polysaccharide deacetylase [141968] (1)
   Pfam 04748
   1. Hypothetical protein BH1492 [141969]
      1. Bacillus halodurans [TaxId: 86665] [141970] (1)
         SQ Q9KCS7 31-254
8. YdjC-like [159441] (1)
   Pfam 04794
   1. Uncharacterized protein EF3048 [159442]
      1. Enterococcus faecalis [TaxId: 1351] [159443] (2)
         SQ P59745 2-262

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk