Structural Classification of Proteins
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Superfamily: Glycoside hydrolase/deacetylase

in the different families beta-barrels are similarly distorted but may vary in the number of strands
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: 7-stranded beta/alpha barrel [51988]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
  4. Superfamily: Glycoside hydrolase/deacetylase [88713]
    in the different families beta-barrels are similarly distorted but may vary in the number of strands
    link to SUPERFAMILY database - Superfamily

Families:

  1. 4-alpha-glucanotransferase, N-terminal domain [89554] (1)
    family 57 glycoside hydrolase; overall domain organization is similar to that of the alpha-mannosidase family
    1. 4-alpha-glucanotransferase, N-terminal domain [89555]
      1. Archaeon Thermococcus litoralis [TaxId: 2265] [89556] (3)
        1. 1k1x picpicxrefxref
          complexed with ca, trs
          1. region a:1-310 [84281] picpiclink
          2. region b:2-310 [84284] picpiclink
        2. 1k1y picpicxrefxref
          complexed with acr, ca, mal, trs
          1. region a:1-310 [84287] picpiclink
          2. region b:2-310 [84290] picpiclink
        3. 1k1w picpicxrefxref
          complexed with ca, glc, mse, so4
          1. region a:4-310 [84278] picpiclink
  2. alpha-mannosidase [88714] (2)
    family 38 glycoside hydrolase; overall domain organization is similar to that of the 4-alpha-glucanotransferase family
    1. Golgi alpha-mannosidase II [88715]
      1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [88716] (46)
        SQ Q24451 94-1107
        1. 3bvu picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, po4, wz2, zn; mutant
          1. region a:31-411 [155669] picpiclink
        2. 3bvx picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, wz5, zn; mutant
          1. region a:31-411 [155678] picpiclink
        3. 2ow6 picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, nk1, po4, zn
          1. region a:31-411 [149041] picpiclink
        4. 3ddf picpicxrefxref
          automatically matched to d1htya3
          complexed with gb6, mpd, mrd, nag, zn
          1. region a:31-411 [157549] picpiclink
        5. 3bvw picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, wz4, zn; mutant
          1. region a:31-411 [155675] picpiclink
        6. 3bui picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, trs, zn; mutant
          1. region a:31-411 [155609] picpiclink
        7. 1qwn picpicxrefxref
          complexed with gul, mpd, nag, trs, zn
          1. region a:31-411 [96489] picpiclink
        8. 1tqw picpicxrefxref
          automatically matched to d1htya3
          complexed with blt, mrd, nag, zn; mutant
          1. region a:31-411 [119326] picpiclink
        9. 2f7p picpicxrefxref
          automatically matched to d1htya3
          complexed with 2sk, mpd, nag, zn
          1. region a:31-411 [133097] picpiclink
        10. 3bvv picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, mrd, po4, wz3, zn; mutant
          1. region a:31-411 [155672] picpiclink
        11. 1tqs picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, sso, zn; mutant
          1. region a:31-411 [119314] picpiclink
        12. 3blb picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, swa, zn
          1. region a:31-411 [155392] picpiclink
        13. 1qx1 picpicxrefxref
          complexed with fmf, mpd, nag, zn; mutant
          1. region a:31-411 [96514] picpiclink
        14. 2f18 picpicxrefxref
          automatically matched to d1htya3
          complexed with gb1, mpd, nag, po4, zn
          1. region a:31-411 [132721] picpiclink
        15. 3bvt picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, mrd, nag, po4, wz1, zn; mutant
          1. region a:31-411 [155666] picpiclink
        16. 2f7r picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, nag, sk3, zn
          1. region a:31-411 [133103] picpiclink
        17. 3czs picpicxrefxref
          automatically matched to d1htya3
          complexed with man, mpd, nag, zn; mutant
          1. region a:31-411 [157158] picpiclink
        18. 3d4z picpicxrefxref
          automatically matched to d1htya3
          complexed with gim, mrd, zn
          1. region a:31-411 [157315] picpiclink
        19. 3bub picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, nag, zn
          1. region a:31-411 [155603] picpiclink
        20. 3czn picpicxrefxref
          automatically matched to d1htya3
          complexed with m5g, nag, zn; mutant
          1. region a:31-411 [157153] picpiclink
        21. 1hty picpicxrefxref
          complexed with mpd, nag, trs, zn
          1. region a:31-411 [83066] picpiclink
        22. 2f1a picpicxrefxref
          automatically matched to d1htya3
          complexed with gb2, mpd, nag, po4, zn
          1. region a:31-411 [132724] picpiclink
        23. 2f1b picpicxrefxref
          automatically matched to d1htya3
          complexed with gb3, mpd, nag, zn
          1. region a:31-411 [132727] picpiclink
        24. 3d51 picpicxrefxref
          automatically matched to d1htya3
          complexed with gox, mrd, zn
          1. region a:31-411 [157321] picpiclink
        25. 2f7o picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, msn, nag, po4, zn
          1. region a:31-411 [133094] picpiclink
        26. 1hxk picpicxrefxref
          complexed with ddm, mpd, nag, zn
          1. region a:31-411 [83072] picpiclink
        27. 3d4y picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, mrd, mvl, nag, zn
          1. region a:31-411 [157312] picpiclink
        28. 3cv5 picpicxrefxref
          automatically matched to d1htya3
          complexed with m5s, mpd, nag, zn; mutant
          1. region a:31-411 [157001] picpiclink
        29. 1r33 picpicxrefxref
          complexed with lka, mpd, nag, zn
          1. region a:31-411 [111669] picpiclink
        30. 3d52 picpicxrefxref
          automatically matched to d1htya3
          complexed with ghr, mrd, zn
          1. region a:31-411 [157324] picpiclink
        31. 2alw picpicxrefxref
          automatically matched to d1htya3
          complexed with mnm, mpd, nag, zn
          1. region a:31-411 [126985] picpiclink
        32. 3d50 picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, nag, oev, zn
          1. region a:31-411 [157318] picpiclink
        33. 3ddg picpicxrefxref
          automatically matched to d1htya3
          complexed with gb7, mrd, nag, po4, zn
          1. region a:31-411 [157552] picpiclink
        34. 2f7q picpicxrefxref
          automatically matched to d1htya3
          complexed with aol, mpd, nag, zn
          1. region a:31-411 [133100] picpiclink
        35. 3bud picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, nag, po4, zn; mutant
          1. region a:31-411 [155606] picpiclink
        36. 2ow7 picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, nk2, so4, zn
          1. region a:31-411 [149044] picpiclink
        37. 1tqt picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, nag, ssd, zn; mutant
          1. region a:31-411 [119317] picpiclink
        38. 1r34 picpicxrefxref
          complexed with lks, mpd, nag, zn
          1. region a:31-411 [111672] picpiclink
        39. 1tqu picpicxrefxref
          automatically matched to d1htya3
          complexed with gha, mrd, ndg, zn; mutant
          1. region a:31-411 [119320] picpiclink
        40. 1ps3 picpicxrefxref
          complexed with kif, mpd, nag, zn
          1. region a:31-411 [95067] picpiclink
        41. 1hww picpicxrefxref
          complexed with mpd, nag, swa, zn
          1. region a:31-411 [83069] picpiclink
        42. 2fyv picpicxrefxref
          automatically matched to d1htya3
          complexed with mpd, nag, po4, w72, zn
          1. region a:31-411 [134407] picpiclink
        43. 1qwu picpicxrefxref
          complexed with gul, mpd, nag, zn; mutant
          1. region a:31-411 [96505] picpiclink
        44. 3bup picpicxrefxref
          automatically matched to d1htya3
          complexed with man, mpd, nag, zn; mutant
          1. region a:31-411 [155637] picpiclink
        45. 1tqv picpicxrefxref
          automatically matched to d1htya3
          complexed with mrd, ndg, sse, zn; mutant
          1. region a:31-411 [119323] picpiclink
        46. 3buq picpicxrefxref
          automatically matched to d1htya3
          complexed with man, mpd, nag, zn; mutant
          1. region a:31-411 [155640] picpiclink
    2. Lysosomal alpha-mannosidase [89557]
      the single-chain precursor is processed into 5 peptides; heavily glycosylated
      1. Cow (Bos taurus) [TaxId: 9913] [89558] (1)
        1. 1o7d picpicxrefxref
          complexed with bma, man, nag, ndg, so4, trs, zn
          1. region a:51-342,b:347-384 [86641] picpiclink
  3. AmyC N-terminal domain-like [102189] (2)
    1. Hypothetical protein TT1467, N-terminal domain [102190]
      1. Thermus thermophilus [TaxId: 274] [102191] (1)
        1. 1ufa picpicxref
          structural genomics
          1. region a:1-412 [99330] picpiclink
    2. Alpha-amylase AmyC [141951]
      1. Thermotoga maritima [TaxId: 2336] [141952] (1)
        SQ A1GKL6 1-404
        1. 2b5d picpicxref
          1. region x:1-404 [127887] picpiclink
  4. NodB-like polysaccharide deacetylase [89559] (6)
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456
    1. Probable polysaccharide deacetylase PdaA [89560]
      1. Bacillus subtilis [TaxId: 1423] [89561] (7)
        1. 1ny1 picpic
          structural genomics; target SR127
          complexed with mse
          1. chain a [86395] picpiclink
          2. chain b [86396] picpiclink
        2. 1w17 picpic
          automatically matched to d1ny1a_
          1. region a:24-258 [120573] picpiclink
        3. 1w17 picpic
          automatically matched to d1ny1a_
          1. region b:24-258 [120574] picpiclink
        4. 1w1b picpic
          automatically matched to d1ny1a_
          complexed with cd
          1. region 1:24-258 [120577] picpiclink
        5. 1w1b picpic
          automatically matched to d1ny1a_
          complexed with cd
          1. region 2:24-258 [120578] picpiclink
        6. 1w1a picpic
          automatically matched to d1ny1a_
          complexed with cd, gol, ndg
          1. region 1:24-258 [120575] picpiclink
        7. 1w1a picpic
          automatically matched to d1ny1a_
          complexed with cd, gol, ndg
          1. region 2:24-258 [120576] picpiclink
    2. Chitin deacetylase [141953]
      1. Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576] [141954] (1)
        SQ Q6DWK3 29-248
        1. 2iw0 picpic
          complexed with act, cl, po4, zn
          1. region a:29-248 [137737] picpiclink
    3. Xylanase XynA C-terminal domain [141955]
      1. Clostridium thermocellum [TaxId: 1515] [141956] (2)
        SQ O87119 480-683
        1. 2c71 picpic
          complexed with mg
          1. region a:480-683 [130017] picpiclink
        2. 2c79 picpic
          automatically matched to 2C71 A:480-683
          complexed with co
          1. region a:480-683 [130040] picpiclink
    4. Putative polysaccharide deacetylase BA0424 [141957]
      1. Bacillus anthracis [TaxId: 1392] [141958] (1)
        SQ Q81Z49 54-258
        1. 2j13 picpic
          complexed with act, cac, zn
          1. region a:1-235 [137934] picpiclink
    5. Peptidoglycan GlcNAc deacetylase C-terminal domain [141959]
      1. Streptococcus pneumoniae [TaxId: 1313] [141960] (2)
        SQ Q8DP63 268-463
        1. 2c1i picpicxref
          complexed with mes, so4, zn; mutant
          1. region a:268-463 [129636] picpiclink
        2. 2c1g picpicxref
          complexed with act, peg, zn
          1. region a:268-463 [129632] picpiclink
    6. Acetyl-xylan esterase [141961]
      1. Streptomyces lividans [TaxId: 1916] [141962] (2)
        SQ Q54413 42-233
        1. 2cc0 picpic
          complexed with act, zn
          1. region a:1-192 [130209] picpiclink
        2. 2cc0 picpic
          automatically matched to 2CC0 A:1-192
          complexed with act, zn
          1. region b:2-192 [130210] picpiclink
  5. LamB/YcsF-like [117449] (3)
    Pfam 03746
    1. Hypothetical protein YbgL [117450]
      1. Escherichia coli [TaxId: 562] [117451] (1)
        SQ P75746
        1. 1xw8 picpic
          1. chain a [116111] picpiclink
    2. Hypothetical protein PH0986 [117452]
      1. Pyrococcus horikoshii [TaxId: 53953] [117453] (1)
        SQ O58714
        1. 1v6t picpic
          Structural genomics target
          1. chain a [113550] picpiclink
    3. Hypothetical protein TTHB195 [141963]
      1. Thermus thermophilus [TaxId: 274] [141964] (1)
        SQ Q53WG6 1-250
        1. 2dfa picpic
          1. region a:1-250 [131469] picpiclink
  6. PA1517-like [141965] (1)
    seven-stranded barrel with a detectable sequence similarity to the six-stranded barrel NodB-like family; member of the same Pfam family (Pfam 01522)
    1. Hypothetical protein PA1517 [141966]
      1. Pseudomonas aeruginosa [TaxId: 287] [141967] (8)
        SQ Q9I3J6 4-304
        1. 1z7a picpic
          complexed with edo, gol, ipa
          1. region a:4-304 [124591] picpiclink
        2. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region b:4-304 [124592] picpiclink
        3. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region c:5-304 [124593] picpiclink
        4. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region d:5-304 [124594] picpiclink
        5. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region e:4-304 [124595] picpiclink
        6. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region f:5-304 [124596] picpiclink
        7. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region g:4-304 [124597] picpiclink
        8. 1z7a picpic
          automatically matched to 1Z7A A:4-304
          complexed with edo, gol, ipa
          1. region h:5-304 [124598] picpiclink
  7. Divergent polysaccharide deacetylase [141968] (1)
    Pfam 04748
    1. Hypothetical protein BH1492 [141969]
      1. Bacillus halodurans [TaxId: 86665] [141970] (1)
        SQ Q9KCS7 31-254
        1. 2nly picpic
          complexed with zn
          1. region a:31-254 [138364] picpiclink
  8. YdjC-like [159441] (1)
    Pfam 04794
    1. Uncharacterized protein EF3048 [159442]
      1. Enterococcus faecalis [TaxId: 1351] [159443] (2)
        SQ P59745 2-262
        1. 2i5i picpic
          1. region a:2-262 [147514] picpiclink
        2. 2i5i picpic
          automatically matched to 2I5I A:2-262
          1. region b:2-262 [147515] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk