Structural Classification of Proteins
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Family: NagD-like

duplication: consists of two segment-swapped domains of this fold; this results in the insertion of a circularly permuted domain after strand 3, analogously to the Cof family

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: HAD-like [56783]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. Superfamily: HAD-like [56784]
    usually contains an insertion (sub)domain after strand 1
    link to SUPERFAMILY database - Superfamily
  5. Family: NagD-like [102317]
    duplication: consists of two segment-swapped domains of this fold; this results in the insertion of a circularly permuted domain after strand 3, analogously to the Cof family

Protein Domains:

  1. Hypothetical protein TM1742 [102318]
    putative NagD protein
    1. Thermotoga maritima [TaxId: 2336] [102319] (2)
      1. 1vjr picpic
        structural genomics
        complexed with cl, ni
        1. chain a [100832] picpiclink
      2. 1pw5 picpic
        structural genomics,
        complexed with nag, so4
        1. chain a [95199] picpiclink
  2. Putative phosphatase SMU.1415c [117507]
    1. Streptococcus mutans [TaxId: 1309] [117508] (1)
      SQ Q8DTD6
      1. 1wvi picpic
        Structural genomics target
        1. chain a [114915] picpiclink
        2. chain b [114916] picpiclink
        3. chain c [114917] picpiclink
        4. chain d [114918] picpiclink
  3. Hypothetical protein SPy1043 [142167]
    1. Streptococcus pyogenes [TaxId: 1314] [142168] (1)
      SQ Q99ZW4 2-254
      1. 1ys9 picpic
        mutant
        1. region a:2-254 [123965] picpiclink
  4. NagD [142169]
    1. Escherichia coli [TaxId: 562] [142170] (1)
      SQ P0AF24 1-250
      1. 2c4n picpic
        complexed with mg, po4
        1. region a:1-250 [129837] picpiclink
  5. Putative hydrolase SP1407 [142171]
    1. Streptococcus pneumoniae [TaxId: 1313] [142172] (1)
      SQ Q97Q24 3-255
      1. 1ydf picpic
        complexed with mg
        1. region a:4-256 [122996] picpiclink
  6. Putative hydrolase EF1188 [142173]
    1. Enterococcus faecalis [TaxId: 1351] [142174] (2)
      SQ Q836C7 4-256
      1. 1yv9 picpic
        complexed with po4
        1. region a:4-256 [124089] picpiclink
      2. 1yv9 picpic
        automatically matched to 1YV9 A:4-256
        complexed with po4
        1. region b:4-256 [124090] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk