Structural Classification of Proteins
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Protein: D-Ala-D-Ala ligase, N-domain from Escherichia coli, gene ddlB [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PreATP-grasp domain [52439]
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. Superfamily: PreATP-grasp domain [52440]
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
    link to SUPERFAMILY database - Superfamily
  5. Family: D-Alanine ligase N-terminal domain [52452]
  6. Protein: D-Ala-D-Ala ligase, N-domain [52453]
  7. Species: Escherichia coli, gene ddlB [TaxId: 562] [52454]

PDB Entry Domains:

  1. 1iow picpicxref
    complexed with adp, mg, phy; mutant
    1. region a:1-96 [31713] picpiclink
  2. 2dln picpicxref
    complexed with adp, mg, phy
    1. region a:1-96 [31715] picpiclink
  3. 1iov picpicxref
    complexed with adp, mg, pob
    1. region a:1-96 [31714] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk